Hb_001439_050

Information

Type -
Description -
Location Contig1439: 40459-47501
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12460g
description POPTRDRAFT_1105349; plastocyanin-like domain-containing family protein
nr
ID XP_002324082.1
description plastocyanin-like domain-containing family protein [Populus trichocarpa]
swissprot
ID Q39131
description Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1
trembl
ID A9PAA9
description Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1
Gene Ontology
ID GO:0009055
description lamin-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11573: 40412-42338 , PASA_asmbl_11574: 40520-41828 , PASA_asmbl_11575: 40520-47014
cDNA
(Sanger)
(ID:Location)		 027_C24.ab1: 40412-42254

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_050 0.0 - - plastocyanin-like domain-containing family protein [Populus trichocarpa]
2 Hb_003101_020 0.053113239 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
3 Hb_062807_010 0.0594030768 - - hypothetical protein JCGZ_15896 [Jatropha curcas]
4 Hb_108576_020 0.0691711088 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002518_040 0.0808019427 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_007313_030 0.0925112731 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
7 Hb_011671_050 0.0931591408 - - PREDICTED: F-box protein At5g07670 [Jatropha curcas]
8 Hb_002066_100 0.0948360641 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
9 Hb_001153_160 0.0970725023 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
10 Hb_002301_120 0.0980903254 - - PREDICTED: uncharacterized protein LOC105649581 [Jatropha curcas]
11 Hb_007520_050 0.0984612081 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
12 Hb_004213_010 0.0996931308 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_001258_130 0.1008084708 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
14 Hb_001511_210 0.1009712271 - - PREDICTED: protein ESKIMO 1-like [Jatropha curcas]
15 Hb_000722_030 0.1025419483 - - putative plant disease resistance family protein [Populus trichocarpa]
16 Hb_001053_170 0.1098603051 - - PREDICTED: uncharacterized protein LOC105628694 [Jatropha curcas]
17 Hb_027684_010 0.1121723743 - - hypothetical protein RCOM_0504250 [Ricinus communis]
18 Hb_005305_160 0.1151803712 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001357_160 0.1162227331 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004602_010 0.1169590405 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]

Gene co-expression network

sample Hb_001439_050 Hb_001439_050 Hb_003101_020 Hb_003101_020 Hb_001439_050--Hb_003101_020 Hb_062807_010 Hb_062807_010 Hb_001439_050--Hb_062807_010 Hb_108576_020 Hb_108576_020 Hb_001439_050--Hb_108576_020 Hb_002518_040 Hb_002518_040 Hb_001439_050--Hb_002518_040 Hb_007313_030 Hb_007313_030 Hb_001439_050--Hb_007313_030 Hb_011671_050 Hb_011671_050 Hb_001439_050--Hb_011671_050 Hb_003101_020--Hb_108576_020 Hb_003101_020--Hb_062807_010 Hb_003101_020--Hb_002518_040 Hb_002066_100 Hb_002066_100 Hb_003101_020--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_003101_020--Hb_000722_030 Hb_062807_010--Hb_108576_020 Hb_004602_010 Hb_004602_010 Hb_062807_010--Hb_004602_010 Hb_008304_010 Hb_008304_010 Hb_062807_010--Hb_008304_010 Hb_062807_010--Hb_007313_030 Hb_001153_160 Hb_001153_160 Hb_108576_020--Hb_001153_160 Hb_004213_010 Hb_004213_010 Hb_108576_020--Hb_004213_010 Hb_108576_020--Hb_007313_030 Hb_002518_040--Hb_000722_030 Hb_001258_130 Hb_001258_130 Hb_002518_040--Hb_001258_130 Hb_002518_040--Hb_007313_030 Hb_027684_010 Hb_027684_010 Hb_002518_040--Hb_027684_010 Hb_000086_470 Hb_000086_470 Hb_007313_030--Hb_000086_470 Hb_007313_030--Hb_003101_020 Hb_000120_340 Hb_000120_340 Hb_011671_050--Hb_000120_340 Hb_011671_050--Hb_002518_040 Hb_001511_210 Hb_001511_210 Hb_011671_050--Hb_001511_210 Hb_003666_070 Hb_003666_070 Hb_011671_050--Hb_003666_070 Hb_007632_160 Hb_007632_160 Hb_011671_050--Hb_007632_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0341867 0.854472 20.8819 8.72394 0.025551 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.94913 7.4524

CAGE analysis