Hb_001439_060

Information

Type -
Description -
Location Contig1439: 51130-61891
Sequence    

Annotation

kegg
ID pop:POPTR_0004s12030g
description POPTRDRAFT_859293; hypothetical protein
nr
ID XP_012084760.1
description PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K4M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19889 PE=4 SV=1
Gene Ontology
ID GO:0009055
description PREDICTED: uncharacterized protein LOC105644108

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11576: 51715-52478 , PASA_asmbl_11577: 53530-61885 , PASA_asmbl_11578: 58185-58605
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_060 0.0 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
2 Hb_018133_090 0.1086875333 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000861_020 0.1100240067 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
4 Hb_001491_010 0.1115424017 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
5 Hb_015941_020 0.1170377934 - - -
6 Hb_012760_190 0.1196145908 - - PREDICTED: fatty acyl-CoA reductase 2 [Jatropha curcas]
7 Hb_000337_050 0.1205908753 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
8 Hb_103118_010 0.1213334962 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
9 Hb_011021_020 0.1229213346 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
10 Hb_011716_130 0.1261246918 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
11 Hb_002811_130 0.1293603195 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
12 Hb_000289_110 0.1301064828 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
13 Hb_000107_570 0.1304403652 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
14 Hb_008554_070 0.1309549778 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
15 Hb_002496_020 0.1310751338 - - DNA binding protein, putative [Ricinus communis]
16 Hb_082609_010 0.1332503112 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
17 Hb_001584_200 0.1337889194 - - PREDICTED: Golgi apparatus membrane protein-like protein ECHIDNA [Jatropha curcas]
18 Hb_000224_160 0.1342299047 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
19 Hb_138585_050 0.1347517818 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
20 Hb_003734_110 0.1349784813 - - PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein [Jatropha curcas]

Gene co-expression network

sample Hb_001439_060 Hb_001439_060 Hb_018133_090 Hb_018133_090 Hb_001439_060--Hb_018133_090 Hb_000861_020 Hb_000861_020 Hb_001439_060--Hb_000861_020 Hb_001491_010 Hb_001491_010 Hb_001439_060--Hb_001491_010 Hb_015941_020 Hb_015941_020 Hb_001439_060--Hb_015941_020 Hb_012760_190 Hb_012760_190 Hb_001439_060--Hb_012760_190 Hb_000337_050 Hb_000337_050 Hb_001439_060--Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_001049_110 Hb_001049_110 Hb_018133_090--Hb_001049_110 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_018133_090--Hb_015941_020 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_103118_010 Hb_103118_010 Hb_018133_090--Hb_103118_010 Hb_000861_020--Hb_103118_010 Hb_105123_010 Hb_105123_010 Hb_000861_020--Hb_105123_010 Hb_000631_080 Hb_000631_080 Hb_000861_020--Hb_000631_080 Hb_086639_040 Hb_086639_040 Hb_000861_020--Hb_086639_040 Hb_000061_210 Hb_000061_210 Hb_000861_020--Hb_000061_210 Hb_002154_100 Hb_002154_100 Hb_000861_020--Hb_002154_100 Hb_004125_040 Hb_004125_040 Hb_001491_010--Hb_004125_040 Hb_138585_050 Hb_138585_050 Hb_001491_010--Hb_138585_050 Hb_021576_030 Hb_021576_030 Hb_001491_010--Hb_021576_030 Hb_000210_220 Hb_000210_220 Hb_001491_010--Hb_000210_220 Hb_008554_070 Hb_008554_070 Hb_001491_010--Hb_008554_070 Hb_001671_010 Hb_001671_010 Hb_015941_020--Hb_001671_010 Hb_015941_020--Hb_001049_110 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_005686_090 Hb_005686_090 Hb_015941_020--Hb_005686_090 Hb_000883_060 Hb_000883_060 Hb_015941_020--Hb_000883_060 Hb_114336_020 Hb_114336_020 Hb_012760_190--Hb_114336_020 Hb_012760_190--Hb_103118_010 Hb_012760_190--Hb_008554_070 Hb_012760_190--Hb_001491_010 Hb_004116_140 Hb_004116_140 Hb_012760_190--Hb_004116_140 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.13685 1.67375 5.31994 4.48932 6.9677 11.434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6683 11.5493 11.7894 4.51031 20.119

CAGE analysis