Hb_001439_070

Information

Type transcription factor
Description TF Family: WRKY
Location Contig1439: 67347-72171
Sequence    

Annotation

kegg
ID rcu:RCOM_0538580
description WRKY transcription factor, putative
nr
ID XP_002530024.1
description WRKY transcription factor, putative [Ricinus communis]
swissprot
ID Q9XI90
description Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2
trembl
ID B9SVK5
description WRKY transcription factor, putative OS=Ricinus communis GN=RCOM_0538580 PE=4 SV=1
Gene Ontology
ID GO:0003700
description probable wrky transcription factor 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11580: 67459-69197 , PASA_asmbl_11581: 69549-72564
cDNA
(Sanger)
(ID:Location)		 052_B01.ab1: 69549-72199

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_070 0.0 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
2 Hb_001998_210 0.0714656175 - - unnamed protein product [Coffea canephora]
3 Hb_000617_250 0.0853771154 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic [Jatropha curcas]
4 Hb_003661_010 0.0884427498 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
5 Hb_001059_060 0.0890242216 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
6 Hb_004052_110 0.0901652597 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
7 Hb_001421_090 0.091087991 - - hypothetical protein RCOM_1278080 [Ricinus communis]
8 Hb_001221_300 0.0917174329 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
9 Hb_002828_060 0.0921943163 - - PREDICTED: probable phytol kinase 3, chloroplastic [Jatropha curcas]
10 Hb_000300_030 0.0930933521 - - HIV-1 rev binding protein, hrbl, putative [Ricinus communis]
11 Hb_000482_050 0.0943313991 - - PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Jatropha curcas]
12 Hb_025194_050 0.094463241 - - PREDICTED: uncharacterized protein LOC105644851 isoform X1 [Jatropha curcas]
13 Hb_000510_190 0.0959984381 - - glutathione reductase [Hevea brasiliensis]
14 Hb_001998_220 0.0961060423 - - PREDICTED: isoamylase 1, chloroplastic [Jatropha curcas]
15 Hb_001414_010 0.0964527059 transcription factor TF Family: ARR-B two-component sensor histidine kinase bacteria, putative [Ricinus communis]
16 Hb_000487_370 0.098966067 - - -
17 Hb_005305_130 0.099112479 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
18 Hb_029552_020 0.099890742 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000844_050 0.1003504352 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
20 Hb_007012_030 0.1019429597 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 4-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_070 Hb_001439_070 Hb_001998_210 Hb_001998_210 Hb_001439_070--Hb_001998_210 Hb_000617_250 Hb_000617_250 Hb_001439_070--Hb_000617_250 Hb_003661_010 Hb_003661_010 Hb_001439_070--Hb_003661_010 Hb_001059_060 Hb_001059_060 Hb_001439_070--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001439_070--Hb_004052_110 Hb_001421_090 Hb_001421_090 Hb_001439_070--Hb_001421_090 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001998_210--Hb_001059_060 Hb_001998_210--Hb_004052_110 Hb_009078_020 Hb_009078_020 Hb_001998_210--Hb_009078_020 Hb_000300_030 Hb_000300_030 Hb_001998_210--Hb_000300_030 Hb_007012_030 Hb_007012_030 Hb_000617_250--Hb_007012_030 Hb_025194_050 Hb_025194_050 Hb_000617_250--Hb_025194_050 Hb_000617_250--Hb_001421_090 Hb_000376_210 Hb_000376_210 Hb_000617_250--Hb_000376_210 Hb_000482_050 Hb_000482_050 Hb_000617_250--Hb_000482_050 Hb_068804_090 Hb_068804_090 Hb_000617_250--Hb_068804_090 Hb_000844_050 Hb_000844_050 Hb_003661_010--Hb_000844_050 Hb_048476_080 Hb_048476_080 Hb_003661_010--Hb_048476_080 Hb_003661_010--Hb_000300_030 Hb_160608_010 Hb_160608_010 Hb_003661_010--Hb_160608_010 Hb_003680_020 Hb_003680_020 Hb_003661_010--Hb_003680_020 Hb_003661_010--Hb_001414_010 Hb_001059_060--Hb_009078_020 Hb_000853_330 Hb_000853_330 Hb_001059_060--Hb_000853_330 Hb_001059_060--Hb_004052_110 Hb_011188_010 Hb_011188_010 Hb_001059_060--Hb_011188_010 Hb_002259_220 Hb_002259_220 Hb_004052_110--Hb_002259_220 Hb_001865_100 Hb_001865_100 Hb_004052_110--Hb_001865_100 Hb_000979_140 Hb_000979_140 Hb_004052_110--Hb_000979_140 Hb_004052_110--Hb_011188_010 Hb_024184_010 Hb_024184_010 Hb_001421_090--Hb_024184_010 Hb_000300_510 Hb_000300_510 Hb_001421_090--Hb_000300_510 Hb_000538_280 Hb_000538_280 Hb_001421_090--Hb_000538_280 Hb_005914_040 Hb_005914_040 Hb_001421_090--Hb_005914_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62622 6.35331 6.96 7.09118 1.66137 2.89466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48845 1.541 1.37446 4.30673 10.1093

CAGE analysis