Hb_001439_090

Information

Type -
Description -
Location Contig1439: 86201-89414
Sequence    

Annotation

kegg
ID rcu:RCOM_0538460
description hypothetical protein
nr
ID XP_002530022.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVK3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0538460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11589: 88258-90730
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002890_080 0.1284806494 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001623_070 0.2129421515 - - cytochrome B5 isoform 1, putative [Ricinus communis]
4 Hb_103739_010 0.2243939679 - - sodium/hydrogen exchanger, putative [Ricinus communis]
5 Hb_006469_120 0.2429033814 - - hypothetical protein POPTR_0005s16430g [Populus trichocarpa]
6 Hb_024650_040 0.2505064788 - - PREDICTED: josephin-like protein [Jatropha curcas]
7 Hb_002890_070 0.252362669 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
8 Hb_001016_080 0.2532930335 - - hypothetical protein EUGRSUZ_J02452 [Eucalyptus grandis]
9 Hb_001401_100 0.2635417467 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
10 Hb_042871_010 0.2653947053 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]
11 Hb_007441_170 0.270983256 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
12 Hb_000622_080 0.2763165716 - - auxin-responsive GH3 family protein [Hevea brasiliensis]
13 Hb_002227_010 0.2771257215 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
14 Hb_003891_090 0.2790218753 - - -
15 Hb_005321_010 0.2886433767 - - PREDICTED: uncharacterized protein LOC105644542 [Jatropha curcas]
16 Hb_001437_160 0.2900645173 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
17 Hb_008609_030 0.2908179866 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_015057_030 0.2923311114 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
19 Hb_002217_460 0.2942428039 - - PREDICTED: transcription factor bHLH147-like [Jatropha curcas]
20 Hb_006277_070 0.2957508829 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001439_090 Hb_001439_090 Hb_002890_080 Hb_002890_080 Hb_001439_090--Hb_002890_080 Hb_001623_070 Hb_001623_070 Hb_001439_090--Hb_001623_070 Hb_103739_010 Hb_103739_010 Hb_001439_090--Hb_103739_010 Hb_006469_120 Hb_006469_120 Hb_001439_090--Hb_006469_120 Hb_024650_040 Hb_024650_040 Hb_001439_090--Hb_024650_040 Hb_002890_070 Hb_002890_070 Hb_001439_090--Hb_002890_070 Hb_002890_080--Hb_024650_040 Hb_015057_030 Hb_015057_030 Hb_002890_080--Hb_015057_030 Hb_002890_080--Hb_006469_120 Hb_002890_080--Hb_002890_070 Hb_051067_010 Hb_051067_010 Hb_002890_080--Hb_051067_010 Hb_001623_070--Hb_002890_070 Hb_003376_380 Hb_003376_380 Hb_001623_070--Hb_003376_380 Hb_003398_020 Hb_003398_020 Hb_001623_070--Hb_003398_020 Hb_011609_110 Hb_011609_110 Hb_001623_070--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_001623_070--Hb_042871_010 Hb_001401_100 Hb_001401_100 Hb_103739_010--Hb_001401_100 Hb_001226_010 Hb_001226_010 Hb_103739_010--Hb_001226_010 Hb_001437_160 Hb_001437_160 Hb_103739_010--Hb_001437_160 Hb_103739_010--Hb_002890_080 Hb_000152_310 Hb_000152_310 Hb_103739_010--Hb_000152_310 Hb_014497_080 Hb_014497_080 Hb_006469_120--Hb_014497_080 Hb_006469_120--Hb_051067_010 Hb_000062_300 Hb_000062_300 Hb_006469_120--Hb_000062_300 Hb_003732_040 Hb_003732_040 Hb_006469_120--Hb_003732_040 Hb_024650_040--Hb_002890_070 Hb_002908_070 Hb_002908_070 Hb_024650_040--Hb_002908_070 Hb_000622_320 Hb_000622_320 Hb_024650_040--Hb_000622_320 Hb_005772_010 Hb_005772_010 Hb_024650_040--Hb_005772_010 Hb_006277_070 Hb_006277_070 Hb_002890_070--Hb_006277_070 Hb_012573_010 Hb_012573_010 Hb_002890_070--Hb_012573_010 Hb_002890_070--Hb_003732_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0551538 0.601873 2.36914 7.19329 0.0213758 0.0107346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.526825 23.7255 0.223974 0.990401 0.915004

CAGE analysis