Hb_001439_100

Information

Type -
Description -
Location Contig1439: 100737-106684
Sequence    

Annotation

kegg
ID pop:POPTR_0004s11500g
description POPTRDRAFT_818055; SNF1-related protein kinase KIN10
nr
ID XP_012084751.1
description PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
swissprot
ID Q38997
description SNF1-related protein kinase catalytic subunit alpha KIN10 OS=Arabidopsis thaliana GN=KIN10 PE=1 SV=2
trembl
ID A0A067K4L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19884 PE=4 SV=1
Gene Ontology
ID GO:0004672
description snf1-related protein kinase catalytic subunit alpha kin10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11590: 100785-106632
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_100 0.0 - - PREDICTED: SNF1-related protein kinase catalytic subunit alpha KIN10 [Jatropha curcas]
2 Hb_005054_290 0.0731788058 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
3 Hb_000329_630 0.0761349006 - - PREDICTED: nuclear pore complex protein NUP62 [Jatropha curcas]
4 Hb_029584_050 0.081056614 - - PREDICTED: inorganic pyrophosphatase 3 [Jatropha curcas]
5 Hb_000015_040 0.0825856465 - - PREDICTED: uncharacterized protein LOC105647937 isoform X2 [Jatropha curcas]
6 Hb_000000_460 0.0891040166 - - PREDICTED: peroxisomal membrane protein 11A [Jatropha curcas]
7 Hb_000230_270 0.0942023726 - - PREDICTED: peptide methionine sulfoxide reductase B5-like [Jatropha curcas]
8 Hb_002061_040 0.0949735085 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_000347_030 0.0955747414 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
10 Hb_003761_010 0.0964068737 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_093084_050 0.0969547483 - - PREDICTED: uncharacterized protein LOC105640739 [Jatropha curcas]
12 Hb_006615_020 0.0982592245 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
13 Hb_000125_190 0.0995088058 - - PREDICTED: F-box protein SKIP16 isoform X2 [Jatropha curcas]
14 Hb_001653_020 0.0998764201 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
15 Hb_000221_210 0.1031787564 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
16 Hb_003050_220 0.1047306474 - - hypothetical protein JCGZ_04601 [Jatropha curcas]
17 Hb_000002_340 0.105697222 - - PREDICTED: peroxisomal bifunctional enzyme-like [Jatropha curcas]
18 Hb_000023_280 0.1070961501 - - hypothetical protein POPTR_0006s28210g [Populus trichocarpa]
19 Hb_003057_100 0.1096367961 - - PREDICTED: LOW QUALITY PROTEIN: S-adenosylmethionine mitochondrial carrier protein-like [Malus domestica]
20 Hb_007508_090 0.1099616682 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_100 Hb_001439_100 Hb_005054_290 Hb_005054_290 Hb_001439_100--Hb_005054_290 Hb_000329_630 Hb_000329_630 Hb_001439_100--Hb_000329_630 Hb_029584_050 Hb_029584_050 Hb_001439_100--Hb_029584_050 Hb_000015_040 Hb_000015_040 Hb_001439_100--Hb_000015_040 Hb_000000_460 Hb_000000_460 Hb_001439_100--Hb_000000_460 Hb_000230_270 Hb_000230_270 Hb_001439_100--Hb_000230_270 Hb_005054_290--Hb_000000_460 Hb_005054_290--Hb_000329_630 Hb_001102_140 Hb_001102_140 Hb_005054_290--Hb_001102_140 Hb_000003_480 Hb_000003_480 Hb_005054_290--Hb_000003_480 Hb_000023_280 Hb_000023_280 Hb_005054_290--Hb_000023_280 Hb_000571_120 Hb_000571_120 Hb_000329_630--Hb_000571_120 Hb_000445_420 Hb_000445_420 Hb_000329_630--Hb_000445_420 Hb_000329_650 Hb_000329_650 Hb_000329_630--Hb_000329_650 Hb_000329_630--Hb_000000_460 Hb_029584_050--Hb_000015_040 Hb_006615_020 Hb_006615_020 Hb_029584_050--Hb_006615_020 Hb_001653_020 Hb_001653_020 Hb_029584_050--Hb_001653_020 Hb_001268_410 Hb_001268_410 Hb_029584_050--Hb_001268_410 Hb_000665_050 Hb_000665_050 Hb_029584_050--Hb_000665_050 Hb_001579_220 Hb_001579_220 Hb_000015_040--Hb_001579_220 Hb_003050_220 Hb_003050_220 Hb_000015_040--Hb_003050_220 Hb_000015_040--Hb_006615_020 Hb_002000_080 Hb_002000_080 Hb_000015_040--Hb_002000_080 Hb_003761_010 Hb_003761_010 Hb_000015_040--Hb_003761_010 Hb_000000_460--Hb_001102_140 Hb_000705_210 Hb_000705_210 Hb_000000_460--Hb_000705_210 Hb_000679_010 Hb_000679_010 Hb_000000_460--Hb_000679_010 Hb_000230_270--Hb_000329_630 Hb_000347_030 Hb_000347_030 Hb_000230_270--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_000230_270--Hb_000125_190 Hb_000230_270--Hb_029584_050 Hb_000446_030 Hb_000446_030 Hb_000230_270--Hb_000446_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2335 32.0455 10.5986 26.2633 19.0472 26.8415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.5097 34.5824 33.3842 30.5864 14.553

CAGE analysis