Hb_001439_110

Information

Type transcription factor
Description TF Family: ERF
Location Contig1439: 109581-110792
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12370g
description POPTRDRAFT_778552; hypothetical protein
nr
ID XP_011035804.1
description PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
swissprot
ID Q6J9S1
description Ethylene-responsive transcription factor RAP2-11 OS=Arabidopsis thaliana GN=RAP2-11 PE=2 SV=1
trembl
ID B9IK18
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12370g PE=4 SV=2
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor rap2-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_110 0.0 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
2 Hb_030982_060 0.1887931687 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003226_120 0.1917373575 - - conserved hypothetical protein [Ricinus communis]
4 Hb_138710_010 0.205136412 - - Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Gossypium arboreum]
5 Hb_000189_590 0.2059722326 - - PREDICTED: cysteine synthase [Jatropha curcas]
6 Hb_003592_030 0.20818704 - - PREDICTED: dCTP pyrophosphatase 1-like [Jatropha curcas]
7 Hb_001390_030 0.2134936489 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
8 Hb_002539_020 0.2135488767 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
9 Hb_032225_030 0.2135790037 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
10 Hb_002539_010 0.2204022128 - - hypothetical protein JCGZ_15711 [Jatropha curcas]
11 Hb_011947_020 0.2212958628 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
12 Hb_009736_010 0.2234565404 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002835_350 0.2259669751 - - PREDICTED: uncharacterized protein LOC105640319 [Jatropha curcas]
14 Hb_000094_370 0.2269854553 - - -
15 Hb_001170_010 0.2283275242 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
16 Hb_011861_120 0.2314904044 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
17 Hb_002471_260 0.2316516247 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
18 Hb_004079_080 0.2343820494 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
19 Hb_006816_270 0.2390359132 - - conserved hypothetical protein [Ricinus communis]
20 Hb_017170_030 0.2397417872 - - PREDICTED: acyl-coenzyme A oxidase 3, peroxisomal-like [Jatropha curcas]

Gene co-expression network

sample Hb_001439_110 Hb_001439_110 Hb_030982_060 Hb_030982_060 Hb_001439_110--Hb_030982_060 Hb_003226_120 Hb_003226_120 Hb_001439_110--Hb_003226_120 Hb_138710_010 Hb_138710_010 Hb_001439_110--Hb_138710_010 Hb_000189_590 Hb_000189_590 Hb_001439_110--Hb_000189_590 Hb_003592_030 Hb_003592_030 Hb_001439_110--Hb_003592_030 Hb_001390_030 Hb_001390_030 Hb_001439_110--Hb_001390_030 Hb_011947_020 Hb_011947_020 Hb_030982_060--Hb_011947_020 Hb_032225_030 Hb_032225_030 Hb_030982_060--Hb_032225_030 Hb_000922_010 Hb_000922_010 Hb_030982_060--Hb_000922_010 Hb_030982_060--Hb_003592_030 Hb_030982_060--Hb_000189_590 Hb_008226_070 Hb_008226_070 Hb_003226_120--Hb_008226_070 Hb_028872_110 Hb_028872_110 Hb_003226_120--Hb_028872_110 Hb_004079_080 Hb_004079_080 Hb_003226_120--Hb_004079_080 Hb_000159_120 Hb_000159_120 Hb_003226_120--Hb_000159_120 Hb_003906_170 Hb_003906_170 Hb_003226_120--Hb_003906_170 Hb_007943_160 Hb_007943_160 Hb_003226_120--Hb_007943_160 Hb_138710_010--Hb_001390_030 Hb_094437_060 Hb_094437_060 Hb_138710_010--Hb_094437_060 Hb_138710_010--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_138710_010--Hb_001332_040 Hb_000805_320 Hb_000805_320 Hb_138710_010--Hb_000805_320 Hb_138710_010--Hb_003226_120 Hb_000189_590--Hb_011947_020 Hb_002539_020 Hb_002539_020 Hb_000189_590--Hb_002539_020 Hb_002539_010 Hb_002539_010 Hb_000189_590--Hb_002539_010 Hb_002835_350 Hb_002835_350 Hb_000189_590--Hb_002835_350 Hb_002835_340 Hb_002835_340 Hb_003592_030--Hb_002835_340 Hb_000116_590 Hb_000116_590 Hb_003592_030--Hb_000116_590 Hb_009736_010 Hb_009736_010 Hb_003592_030--Hb_009736_010 Hb_004724_450 Hb_004724_450 Hb_003592_030--Hb_004724_450 Hb_011633_040 Hb_011633_040 Hb_001390_030--Hb_011633_040 Hb_003813_120 Hb_003813_120 Hb_001390_030--Hb_003813_120 Hb_012545_090 Hb_012545_090 Hb_001390_030--Hb_012545_090 Hb_029921_030 Hb_029921_030 Hb_001390_030--Hb_029921_030 Hb_127886_010 Hb_127886_010 Hb_001390_030--Hb_127886_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157997 0.251207 0.053879 0.666981 0.0516465 0.0337974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.240544 0.441508 0.0586957 1.30097 0.130604

CAGE analysis