Hb_001439_140

Information

Type -
Description -
Location Contig1439: 151639-157485
Sequence    

Annotation

kegg
ID rcu:RCOM_0537990
description pattern formation protein, putative
nr
ID XP_002530015.1
description pattern formation protein, putative [Ricinus communis]
swissprot
ID Q9FLY5
description ARF guanine-nucleotide exchange factor GNL1 OS=Arabidopsis thaliana GN=GNL1 PE=3 SV=1
trembl
ID B9SVJ6
description Pattern formation protein, putative OS=Ricinus communis GN=RCOM_0537990 PE=4 SV=1
Gene Ontology
ID GO:0005086
description pattern formation

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_140 0.0 - - pattern formation protein, putative [Ricinus communis]
2 Hb_000313_060 0.0832605669 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
3 Hb_007586_030 0.0839761176 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
4 Hb_001930_010 0.0864751733 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
5 Hb_000193_310 0.0904288436 - - PREDICTED: pentatricopeptide repeat-containing protein At5g44230 [Jatropha curcas]
6 Hb_010417_050 0.091489216 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
7 Hb_014267_010 0.0919604483 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
8 Hb_000005_380 0.0921286973 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
9 Hb_012656_030 0.092968966 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
10 Hb_000878_010 0.0941397201 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
11 Hb_000318_390 0.0942128404 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
12 Hb_003544_180 0.0951244813 - - PREDICTED: uncharacterized protein LOC105630509 [Jatropha curcas]
13 Hb_001268_350 0.0971042783 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105115846 [Populus euphratica]
14 Hb_000514_060 0.097977108 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG isoform X1 [Jatropha curcas]
15 Hb_000390_070 0.0985073767 - - PREDICTED: uncharacterized protein LOC105632478 isoform X1 [Jatropha curcas]
16 Hb_001700_040 0.0988717955 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
17 Hb_124315_020 0.1024063124 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_007757_110 0.1027156579 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
19 Hb_000803_260 0.1031282742 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
20 Hb_001584_150 0.1059418965 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_140 Hb_001439_140 Hb_000313_060 Hb_000313_060 Hb_001439_140--Hb_000313_060 Hb_007586_030 Hb_007586_030 Hb_001439_140--Hb_007586_030 Hb_001930_010 Hb_001930_010 Hb_001439_140--Hb_001930_010 Hb_000193_310 Hb_000193_310 Hb_001439_140--Hb_000193_310 Hb_010417_050 Hb_010417_050 Hb_001439_140--Hb_010417_050 Hb_014267_010 Hb_014267_010 Hb_001439_140--Hb_014267_010 Hb_000313_060--Hb_001930_010 Hb_000878_010 Hb_000878_010 Hb_000313_060--Hb_000878_010 Hb_124315_020 Hb_124315_020 Hb_000313_060--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_000313_060--Hb_000514_060 Hb_000390_070 Hb_000390_070 Hb_000313_060--Hb_000390_070 Hb_000005_380 Hb_000005_380 Hb_007586_030--Hb_000005_380 Hb_000244_250 Hb_000244_250 Hb_007586_030--Hb_000244_250 Hb_000977_180 Hb_000977_180 Hb_007586_030--Hb_000977_180 Hb_006649_060 Hb_006649_060 Hb_007586_030--Hb_006649_060 Hb_123777_030 Hb_123777_030 Hb_007586_030--Hb_123777_030 Hb_002150_030 Hb_002150_030 Hb_007586_030--Hb_002150_030 Hb_001247_070 Hb_001247_070 Hb_001930_010--Hb_001247_070 Hb_001930_010--Hb_000390_070 Hb_003216_080 Hb_003216_080 Hb_001930_010--Hb_003216_080 Hb_001930_010--Hb_124315_020 Hb_001930_010--Hb_000514_060 Hb_012799_030 Hb_012799_030 Hb_000193_310--Hb_012799_030 Hb_000318_390 Hb_000318_390 Hb_000193_310--Hb_000318_390 Hb_012656_030 Hb_012656_030 Hb_000193_310--Hb_012656_030 Hb_006711_100 Hb_006711_100 Hb_000193_310--Hb_006711_100 Hb_000707_050 Hb_000707_050 Hb_000193_310--Hb_000707_050 Hb_003988_010 Hb_003988_010 Hb_010417_050--Hb_003988_010 Hb_010417_050--Hb_014267_010 Hb_004228_010 Hb_004228_010 Hb_010417_050--Hb_004228_010 Hb_001199_100 Hb_001199_100 Hb_010417_050--Hb_001199_100 Hb_000101_240 Hb_000101_240 Hb_010417_050--Hb_000101_240 Hb_001700_040 Hb_001700_040 Hb_010417_050--Hb_001700_040 Hb_014267_010--Hb_012656_030 Hb_014267_010--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_014267_010--Hb_001967_030 Hb_000796_030 Hb_000796_030 Hb_014267_010--Hb_000796_030 Hb_014267_010--Hb_004228_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.61221 2.18236 0.484897 0.812735 2.9484 3.09945
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.4914 1.00382 3.28114 2.01469 2.36915

CAGE analysis