Hb_001439_180

Information

Type -
Description -
Location Contig1439: 173060-175891
Sequence    

Annotation

kegg
ID pop:POPTR_0004s13090g
description hypothetical protein
nr
ID XP_006384339.1
description hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
swissprot
ID Q9FKA5
description Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1
trembl
ID B9N9R7
description Latex abundant protein 1 OS=Populus trichocarpa GN=POPTR_0004s13090g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11604: 173012-175783
cDNA
(Sanger)
(ID:Location)		 001_O12.ab1: 173037-173830 , 002_H03.ab1: 173037-173838 , 003_F13.ab1: 173037-173832 , 007_H11.ab1: 173038-173752 , 008_N07.ab1: 173042-173726 , 019_E06.ab1: 173029-173526 , 023_M09.ab1: 173048-173369 , 037_A10.ab1: 173036-173725 , 038_M10.ab1: 173041-173831 , 040_B05.ab1: 173041-173799 , 040_D22.ab1: 173044-173390 , 044_H02.ab1: 173036-173789 , 047_O14.ab1: 173048-173749

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_180 0.0 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
2 Hb_000076_290 0.0722250724 - - translation factor sui1, putative [Ricinus communis]
3 Hb_001034_020 0.0724595459 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
4 Hb_002675_190 0.0768280907 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_029281_010 0.076888076 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
6 Hb_000331_480 0.078312016 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
7 Hb_004931_040 0.0812710852 - - splicing factor-related family protein [Populus trichocarpa]
8 Hb_002169_010 0.0831056585 - - PREDICTED: la-related protein 6B [Jatropha curcas]
9 Hb_160818_010 0.0832035763 - - -
10 Hb_001431_070 0.0846527361 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
11 Hb_005314_010 0.0906342534 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_015401_020 0.0906592801 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_002270_010 0.091206443 - - Chaperone protein dnaJ, putative [Ricinus communis]
14 Hb_003734_130 0.0960634298 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
15 Hb_000367_290 0.0980174027 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
16 Hb_000413_130 0.099398297 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
17 Hb_004032_350 0.1003108141 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
18 Hb_010866_040 0.1019874667 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
19 Hb_011496_010 0.1020255705 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
20 Hb_042083_070 0.1046715971 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]

Gene co-expression network

sample Hb_001439_180 Hb_001439_180 Hb_000076_290 Hb_000076_290 Hb_001439_180--Hb_000076_290 Hb_001034_020 Hb_001034_020 Hb_001439_180--Hb_001034_020 Hb_002675_190 Hb_002675_190 Hb_001439_180--Hb_002675_190 Hb_029281_010 Hb_029281_010 Hb_001439_180--Hb_029281_010 Hb_000331_480 Hb_000331_480 Hb_001439_180--Hb_000331_480 Hb_004931_040 Hb_004931_040 Hb_001439_180--Hb_004931_040 Hb_000174_200 Hb_000174_200 Hb_000076_290--Hb_000174_200 Hb_004032_350 Hb_004032_350 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_015401_020 Hb_015401_020 Hb_000076_290--Hb_015401_020 Hb_002270_010 Hb_002270_010 Hb_000076_290--Hb_002270_010 Hb_060437_010 Hb_060437_010 Hb_001034_020--Hb_060437_010 Hb_001034_020--Hb_000331_480 Hb_012760_200 Hb_012760_200 Hb_001034_020--Hb_012760_200 Hb_001034_020--Hb_004032_350 Hb_001034_020--Hb_002675_190 Hb_002675_190--Hb_000331_480 Hb_002675_190--Hb_004931_040 Hb_003734_130 Hb_003734_130 Hb_002675_190--Hb_003734_130 Hb_000212_280 Hb_000212_280 Hb_002675_190--Hb_000212_280 Hb_002169_010 Hb_002169_010 Hb_029281_010--Hb_002169_010 Hb_000490_030 Hb_000490_030 Hb_029281_010--Hb_000490_030 Hb_011496_010 Hb_011496_010 Hb_029281_010--Hb_011496_010 Hb_005314_010 Hb_005314_010 Hb_029281_010--Hb_005314_010 Hb_000413_130 Hb_000413_130 Hb_029281_010--Hb_000413_130 Hb_025048_040 Hb_025048_040 Hb_000331_480--Hb_025048_040 Hb_000331_480--Hb_000212_280 Hb_000331_480--Hb_012760_200 Hb_153547_010 Hb_153547_010 Hb_000331_480--Hb_153547_010 Hb_160818_010 Hb_160818_010 Hb_004931_040--Hb_160818_010 Hb_000953_140 Hb_000953_140 Hb_004931_040--Hb_000953_140 Hb_004931_040--Hb_000331_480 Hb_004931_040--Hb_001034_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8286.61 2715.34 214.016 766.137 6553.71 7154.2
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3188.42 1360.89 3631.1 1839.98 448.604

CAGE analysis