Hb_001439_210

Information

Type -
Description -
Location Contig1439: 182415-186385
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12260g
description POPTRDRAFT_577675; EXS family protein
nr
ID XP_002324071.2
description EXS family protein [Populus trichocarpa]
swissprot
ID Q9LJW0
description Phosphate transporter PHO1 homolog 9 OS=Arabidopsis thaliana GN=PHO1-H9 PE=2 SV=1
trembl
ID B9IK09
description EXS family protein OS=Populus trichocarpa GN=POPTR_0017s12260g PE=4 SV=2
Gene Ontology
ID GO:0016021
description phosphate transporter pho1 homolog 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11605: 182336-186507 , PASA_asmbl_11606: 184298-186307
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_210 0.0 - - EXS family protein [Populus trichocarpa]
2 Hb_050847_040 0.1100097787 - - PREDICTED: uncharacterized protein LOC105649141 [Jatropha curcas]
3 Hb_000968_060 0.1140109219 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
4 Hb_000649_330 0.1240530946 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
5 Hb_003849_120 0.125492223 - - PREDICTED: uncharacterized protein LOC100264440 [Vitis vinifera]
6 Hb_001221_390 0.1258762293 - - Phospholipase C 4 precursor, putative [Ricinus communis]
7 Hb_004545_080 0.1282768766 - - protein with unknown function [Ricinus communis]
8 Hb_001001_090 0.130014966 - - PREDICTED: uncharacterized protein LOC105633658 [Jatropha curcas]
9 Hb_000015_150 0.1413340314 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
10 Hb_002488_010 0.1414978716 - - PREDICTED: gamma-interferon-inducible-lysosomal thiol reductase [Jatropha curcas]
11 Hb_000562_100 0.1416427041 - - PREDICTED: protein IQ-DOMAIN 32 [Jatropha curcas]
12 Hb_005214_070 0.1422951201 - - PREDICTED: fatty acid amide hydrolase [Jatropha curcas]
13 Hb_000274_050 0.1436310272 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_000363_180 0.1462447274 - - PREDICTED: uncharacterized protein LOC105633052 [Jatropha curcas]
15 Hb_000012_400 0.1476915702 - - PREDICTED: K(+) efflux antiporter 6 [Jatropha curcas]
16 Hb_000086_180 0.1479543892 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
17 Hb_000032_410 0.148108805 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_004052_180 0.1490538701 - - PREDICTED: protein COBRA-like [Jatropha curcas]
19 Hb_001195_420 0.1506037183 - - PREDICTED: uncharacterized protein LOC105633774 isoform X4 [Jatropha curcas]
20 Hb_000001_090 0.1506331393 - - PREDICTED: uncharacterized protein At3g58460 [Populus euphratica]

Gene co-expression network

sample Hb_001439_210 Hb_001439_210 Hb_050847_040 Hb_050847_040 Hb_001439_210--Hb_050847_040 Hb_000968_060 Hb_000968_060 Hb_001439_210--Hb_000968_060 Hb_000649_330 Hb_000649_330 Hb_001439_210--Hb_000649_330 Hb_003849_120 Hb_003849_120 Hb_001439_210--Hb_003849_120 Hb_001221_390 Hb_001221_390 Hb_001439_210--Hb_001221_390 Hb_004545_080 Hb_004545_080 Hb_001439_210--Hb_004545_080 Hb_004330_020 Hb_004330_020 Hb_050847_040--Hb_004330_020 Hb_050847_040--Hb_004545_080 Hb_001488_290 Hb_001488_290 Hb_050847_040--Hb_001488_290 Hb_000200_330 Hb_000200_330 Hb_050847_040--Hb_000200_330 Hb_003894_060 Hb_003894_060 Hb_050847_040--Hb_003894_060 Hb_002488_010 Hb_002488_010 Hb_000968_060--Hb_002488_010 Hb_002900_150 Hb_002900_150 Hb_000968_060--Hb_002900_150 Hb_000866_070 Hb_000866_070 Hb_000968_060--Hb_000866_070 Hb_000001_090 Hb_000001_090 Hb_000968_060--Hb_000001_090 Hb_003849_160 Hb_003849_160 Hb_000968_060--Hb_003849_160 Hb_000032_410 Hb_000032_410 Hb_000968_060--Hb_000032_410 Hb_001001_090 Hb_001001_090 Hb_000649_330--Hb_001001_090 Hb_000015_150 Hb_000015_150 Hb_000649_330--Hb_000015_150 Hb_009078_020 Hb_009078_020 Hb_000649_330--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_000649_330--Hb_002849_050 Hb_011188_010 Hb_011188_010 Hb_000649_330--Hb_011188_010 Hb_005214_070 Hb_005214_070 Hb_000649_330--Hb_005214_070 Hb_000012_400 Hb_000012_400 Hb_003849_120--Hb_000012_400 Hb_000562_100 Hb_000562_100 Hb_003849_120--Hb_000562_100 Hb_000997_070 Hb_000997_070 Hb_003849_120--Hb_000997_070 Hb_002217_080 Hb_002217_080 Hb_003849_120--Hb_002217_080 Hb_003849_120--Hb_000968_060 Hb_003849_120--Hb_009078_020 Hb_010050_020 Hb_010050_020 Hb_001221_390--Hb_010050_020 Hb_005724_040 Hb_005724_040 Hb_001221_390--Hb_005724_040 Hb_000318_170 Hb_000318_170 Hb_001221_390--Hb_000318_170 Hb_000085_380 Hb_000085_380 Hb_001221_390--Hb_000085_380 Hb_000791_050 Hb_000791_050 Hb_001221_390--Hb_000791_050 Hb_012760_090 Hb_012760_090 Hb_001221_390--Hb_012760_090 Hb_004545_080--Hb_000032_410 Hb_000527_080 Hb_000527_080 Hb_004545_080--Hb_000527_080 Hb_003050_360 Hb_003050_360 Hb_004545_080--Hb_003050_360 Hb_002942_140 Hb_002942_140 Hb_004545_080--Hb_002942_140 Hb_000689_050 Hb_000689_050 Hb_004545_080--Hb_000689_050 Hb_003175_070 Hb_003175_070 Hb_004545_080--Hb_003175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.10325 3.5724 7.74393 7.12696 1.83239 0.829707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.337399 0.0796494 0.481247 2.95642 4.71675

CAGE analysis