Hb_001439_230

Information

Type -
Description -
Location Contig1439: 192322-197325
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12240g
description POPTRDRAFT_835709; cystathionine gamma synthase family protein
nr
ID XP_012084732.1
description PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
swissprot
ID P55217
description Cystathionine gamma-synthase 1, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=1 SV=3
trembl
ID A0A067JTE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19871 PE=3 SV=1
Gene Ontology
ID GO:0003824
description cystathionine gamma- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11609: 192024-197306 , PASA_asmbl_11610: 193720-194142 , PASA_asmbl_11611: 195428-195681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_230 0.0 - - PREDICTED: cystathionine gamma-synthase 1, chloroplastic [Jatropha curcas]
2 Hb_004774_020 0.0918661714 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
3 Hb_002301_170 0.0997485608 - - MAC/Perforin domain-containing protein [Theobroma cacao]
4 Hb_000000_230 0.1024139195 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
5 Hb_006970_050 0.110003387 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
6 Hb_000086_420 0.1145056582 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
7 Hb_000490_060 0.116313804 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
8 Hb_000160_140 0.1172195335 - - PREDICTED: ELL-associated factor 2-like isoform X1 [Jatropha curcas]
9 Hb_000699_210 0.1177867441 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
10 Hb_004225_060 0.1224280974 - - hypothetical protein CISIN_1g027511mg [Citrus sinensis]
11 Hb_007382_120 0.1224839068 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
12 Hb_000111_180 0.1249736976 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
13 Hb_006588_060 0.125015422 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
14 Hb_000926_260 0.1254299587 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001439_220 0.1275619594 - - xenotropic and polytropic murine leukemia virus receptor ids-4, putative [Ricinus communis]
16 Hb_010287_020 0.127940648 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
17 Hb_002042_170 0.1296193402 - - RING/U-box superfamily protein [Theobroma cacao]
18 Hb_000398_100 0.1299786329 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_001488_040 0.1313185344 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
20 Hb_000327_140 0.1314000924 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001439_230 Hb_001439_230 Hb_004774_020 Hb_004774_020 Hb_001439_230--Hb_004774_020 Hb_002301_170 Hb_002301_170 Hb_001439_230--Hb_002301_170 Hb_000000_230 Hb_000000_230 Hb_001439_230--Hb_000000_230 Hb_006970_050 Hb_006970_050 Hb_001439_230--Hb_006970_050 Hb_000086_420 Hb_000086_420 Hb_001439_230--Hb_000086_420 Hb_000490_060 Hb_000490_060 Hb_001439_230--Hb_000490_060 Hb_003925_040 Hb_003925_040 Hb_004774_020--Hb_003925_040 Hb_002042_170 Hb_002042_170 Hb_004774_020--Hb_002042_170 Hb_002900_120 Hb_002900_120 Hb_004774_020--Hb_002900_120 Hb_124677_040 Hb_124677_040 Hb_004774_020--Hb_124677_040 Hb_000699_210 Hb_000699_210 Hb_004774_020--Hb_000699_210 Hb_052764_030 Hb_052764_030 Hb_002301_170--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_002301_170--Hb_009486_160 Hb_001862_110 Hb_001862_110 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_000363_120 Hb_000363_120 Hb_002301_170--Hb_000363_120 Hb_050847_050 Hb_050847_050 Hb_000000_230--Hb_050847_050 Hb_006588_060 Hb_006588_060 Hb_000000_230--Hb_006588_060 Hb_000521_240 Hb_000521_240 Hb_000000_230--Hb_000521_240 Hb_000699_150 Hb_000699_150 Hb_000000_230--Hb_000699_150 Hb_000000_230--Hb_000490_060 Hb_000000_230--Hb_000086_420 Hb_009288_010 Hb_009288_010 Hb_006970_050--Hb_009288_010 Hb_002272_030 Hb_002272_030 Hb_006970_050--Hb_002272_030 Hb_000656_390 Hb_000656_390 Hb_006970_050--Hb_000656_390 Hb_006970_050--Hb_000490_060 Hb_002686_230 Hb_002686_230 Hb_006970_050--Hb_002686_230 Hb_006100_020 Hb_006100_020 Hb_006970_050--Hb_006100_020 Hb_000327_140 Hb_000327_140 Hb_000086_420--Hb_000327_140 Hb_000029_060 Hb_000029_060 Hb_000086_420--Hb_000029_060 Hb_012239_020 Hb_012239_020 Hb_000086_420--Hb_012239_020 Hb_004994_240 Hb_004994_240 Hb_000086_420--Hb_004994_240 Hb_000292_100 Hb_000292_100 Hb_000086_420--Hb_000292_100 Hb_000738_020 Hb_000738_020 Hb_000086_420--Hb_000738_020 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_000490_060--Hb_050847_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.1278 312.69 193.931 135.7 45.4234 64.0197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.2449 192.264 78.7616 165.416 132.729

CAGE analysis