Hb_001439_240

Information

Type transcription factor
Description TF Family: MYB
Location Contig1439: 209111-211076
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12230g
description POPTRDRAFT_825568; hypothetical protein
nr
ID XP_002323871.1
description hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
swissprot
ID Q8GWP0
description Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1
trembl
ID B9IK06
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s12230g PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb-related protein 306-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11613: 208712-211174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001439_240 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
2 Hb_002053_100 0.0553552296 - - actin binding protein, putative [Ricinus communis]
3 Hb_000830_010 0.0590853011 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000340_550 0.0592013271 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
5 Hb_181744_010 0.0742014812 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
6 Hb_005276_190 0.0762600808 - - PREDICTED: uncharacterized protein LOC105650003 isoform X2 [Jatropha curcas]
7 Hb_003777_260 0.0826827452 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
8 Hb_002918_220 0.0887799226 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
9 Hb_004422_030 0.0924817011 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
10 Hb_000038_070 0.0984054113 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005288_090 0.0999159218 - - PREDICTED: uncharacterized protein LOC105647753 [Jatropha curcas]
12 Hb_004109_100 0.1033307854 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
13 Hb_005116_120 0.103715433 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
14 Hb_005568_140 0.105542291 - - ATP binding protein, putative [Ricinus communis]
15 Hb_015299_040 0.1058454886 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
16 Hb_158845_010 0.1068099673 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
17 Hb_004225_160 0.1069897188 - - PREDICTED: kiwellin-like [Jatropha curcas]
18 Hb_001301_310 0.1075145269 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001571_080 0.1096604129 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
20 Hb_001541_140 0.1111600382 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]

Gene co-expression network

sample Hb_001439_240 Hb_001439_240 Hb_002053_100 Hb_002053_100 Hb_001439_240--Hb_002053_100 Hb_000830_010 Hb_000830_010 Hb_001439_240--Hb_000830_010 Hb_000340_550 Hb_000340_550 Hb_001439_240--Hb_000340_550 Hb_181744_010 Hb_181744_010 Hb_001439_240--Hb_181744_010 Hb_005276_190 Hb_005276_190 Hb_001439_240--Hb_005276_190 Hb_003777_260 Hb_003777_260 Hb_001439_240--Hb_003777_260 Hb_002053_100--Hb_000830_010 Hb_002053_100--Hb_005276_190 Hb_002053_100--Hb_000340_550 Hb_001349_050 Hb_001349_050 Hb_002053_100--Hb_001349_050 Hb_001301_310 Hb_001301_310 Hb_002053_100--Hb_001301_310 Hb_000830_010--Hb_005276_190 Hb_000830_010--Hb_000340_550 Hb_000576_140 Hb_000576_140 Hb_000830_010--Hb_000576_140 Hb_000830_010--Hb_181744_010 Hb_000340_550--Hb_003777_260 Hb_000340_550--Hb_181744_010 Hb_005288_090 Hb_005288_090 Hb_000340_550--Hb_005288_090 Hb_005116_120 Hb_005116_120 Hb_000340_550--Hb_005116_120 Hb_001279_110 Hb_001279_110 Hb_181744_010--Hb_001279_110 Hb_181744_010--Hb_005116_120 Hb_181744_010--Hb_003777_260 Hb_000060_030 Hb_000060_030 Hb_181744_010--Hb_000060_030 Hb_000038_070 Hb_000038_070 Hb_181744_010--Hb_000038_070 Hb_005276_190--Hb_001349_050 Hb_005276_190--Hb_000576_140 Hb_002203_010 Hb_002203_010 Hb_005276_190--Hb_002203_010 Hb_003777_260--Hb_005116_120 Hb_002243_030 Hb_002243_030 Hb_003777_260--Hb_002243_030 Hb_003777_260--Hb_005288_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.40782 26.1896 11.787 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.56382 3.80475

CAGE analysis