Hb_001440_010

Information

Type -
Description -
Location Contig1440: 6569-25830
Sequence    

Annotation

kegg
ID pxb:103958392
description armadillo repeat-containing kinesin-like protein 1
nr
ID XP_011041064.1
description PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
swissprot
ID Q9SV36
description Armadillo repeat-containing kinesin-like protein 1 OS=Arabidopsis thaliana GN=ARK1 PE=1 SV=2
trembl
ID M5XT76
description Kinesin-like protein OS=Prunus persica GN=PRUPE_ppa015323mg PE=3 SV=1
Gene Ontology
ID GO:0005871
description armadillo repeat-containing kinesin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11638: 9035-14487 , PASA_asmbl_11639: 14842-20567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001440_010 0.0 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
2 Hb_000834_220 0.0748607923 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
3 Hb_001946_200 0.0754926298 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
4 Hb_000230_360 0.0818222051 - - PREDICTED: BI1-like protein [Jatropha curcas]
5 Hb_003656_090 0.083364659 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
6 Hb_001936_180 0.084289378 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
7 Hb_022092_110 0.0886048075 - - PREDICTED: probable protein phosphatase 2C 52 [Jatropha curcas]
8 Hb_002301_370 0.0895475008 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
9 Hb_000645_160 0.0979012484 - - protein translocase, putative [Ricinus communis]
10 Hb_032920_030 0.1009263165 - - signal transducer, putative [Ricinus communis]
11 Hb_001019_160 0.1051768916 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001638_150 0.1062616463 - - acyltransferase, putative [Ricinus communis]
13 Hb_015001_030 0.1070150014 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
14 Hb_003092_020 0.1096818494 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
15 Hb_106089_010 0.1109340478 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
16 Hb_010174_180 0.1110860709 - - protein binding protein, putative [Ricinus communis]
17 Hb_003607_140 0.1113149411 - - 3-ketoacyl-CoA thiolase B, putative [Ricinus communis]
18 Hb_031385_010 0.1119463472 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
19 Hb_026240_020 0.1122529039 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
20 Hb_000365_430 0.1126875518 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]

Gene co-expression network

sample Hb_001440_010 Hb_001440_010 Hb_000834_220 Hb_000834_220 Hb_001440_010--Hb_000834_220 Hb_001946_200 Hb_001946_200 Hb_001440_010--Hb_001946_200 Hb_000230_360 Hb_000230_360 Hb_001440_010--Hb_000230_360 Hb_003656_090 Hb_003656_090 Hb_001440_010--Hb_003656_090 Hb_001936_180 Hb_001936_180 Hb_001440_010--Hb_001936_180 Hb_022092_110 Hb_022092_110 Hb_001440_010--Hb_022092_110 Hb_005144_060 Hb_005144_060 Hb_000834_220--Hb_005144_060 Hb_002918_120 Hb_002918_120 Hb_000834_220--Hb_002918_120 Hb_000834_220--Hb_003656_090 Hb_000834_220--Hb_001936_180 Hb_001597_030 Hb_001597_030 Hb_000834_220--Hb_001597_030 Hb_001946_200--Hb_022092_110 Hb_001946_200--Hb_001936_180 Hb_009113_080 Hb_009113_080 Hb_001946_200--Hb_009113_080 Hb_026240_020 Hb_026240_020 Hb_001946_200--Hb_026240_020 Hb_032920_030 Hb_032920_030 Hb_001946_200--Hb_032920_030 Hb_000061_310 Hb_000061_310 Hb_000230_360--Hb_000061_310 Hb_002301_370 Hb_002301_370 Hb_000230_360--Hb_002301_370 Hb_031385_010 Hb_031385_010 Hb_000230_360--Hb_031385_010 Hb_000230_360--Hb_000834_220 Hb_001019_160 Hb_001019_160 Hb_000230_360--Hb_001019_160 Hb_008175_050 Hb_008175_050 Hb_003656_090--Hb_008175_050 Hb_001138_070 Hb_001138_070 Hb_003656_090--Hb_001138_070 Hb_015001_030 Hb_015001_030 Hb_003656_090--Hb_015001_030 Hb_001141_160 Hb_001141_160 Hb_003656_090--Hb_001141_160 Hb_001936_180--Hb_022092_110 Hb_000365_430 Hb_000365_430 Hb_001936_180--Hb_000365_430 Hb_000645_160 Hb_000645_160 Hb_001936_180--Hb_000645_160 Hb_000418_170 Hb_000418_170 Hb_001936_180--Hb_000418_170 Hb_000735_060 Hb_000735_060 Hb_022092_110--Hb_000735_060 Hb_022092_110--Hb_000418_170 Hb_002311_280 Hb_002311_280 Hb_022092_110--Hb_002311_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0712753 2.39881 5.21015 6.25735 0.123133 0.0593206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.079717 0.0806583 0.0172019 2.98232 3.60819

CAGE analysis