Hb_001442_060

Information

Type -
Description -
Location Contig1442: 66888-73985
Sequence    

Annotation

kegg
ID cic:CICLE_v10007465mg
description hypothetical protein
nr
ID XP_012077209.1
description PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
swissprot
ID P97868
description E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5
trembl
ID A0A067KG93
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07609 PE=4 SV=1
Gene Ontology
ID GO:0046872
description e3 ubiquitin-protein ligase rbbp6-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11652: 66938-68724 , PASA_asmbl_11653: 68812-69932 , PASA_asmbl_11654: 70005-73085 , PASA_asmbl_11655: 73188-73741
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001442_060 0.0 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
2 Hb_000062_020 0.0607841401 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000238_030 0.0628460332 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000099_030 0.0688187181 - - 6-phosphogluconate dehydrogenase, putative [Ricinus communis]
5 Hb_056691_060 0.0738256588 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
6 Hb_000001_170 0.0738516061 - - amino acid transporter, putative [Ricinus communis]
7 Hb_012760_100 0.0753964001 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
8 Hb_002414_050 0.0773629678 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
9 Hb_102698_010 0.0785826294 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
10 Hb_004327_040 0.0797699902 - - PREDICTED: tetratricopeptide repeat protein 27 homolog [Jatropha curcas]
11 Hb_039946_050 0.0830686708 - - catalytic, putative [Ricinus communis]
12 Hb_004109_230 0.0831493383 - - heat shock protein binding protein, putative [Ricinus communis]
13 Hb_009193_120 0.0833739967 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
14 Hb_002284_250 0.0834422575 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
15 Hb_000252_050 0.0834666646 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]
16 Hb_007635_040 0.084808542 - - PREDICTED: WAT1-related protein At3g45870 isoform X1 [Jatropha curcas]
17 Hb_004109_370 0.0853979516 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_003943_010 0.0865766081 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000981_030 0.0868877778 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
20 Hb_003734_010 0.0870113398 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]

Gene co-expression network

sample Hb_001442_060 Hb_001442_060 Hb_000062_020 Hb_000062_020 Hb_001442_060--Hb_000062_020 Hb_000238_030 Hb_000238_030 Hb_001442_060--Hb_000238_030 Hb_000099_030 Hb_000099_030 Hb_001442_060--Hb_000099_030 Hb_056691_060 Hb_056691_060 Hb_001442_060--Hb_056691_060 Hb_000001_170 Hb_000001_170 Hb_001442_060--Hb_000001_170 Hb_012760_100 Hb_012760_100 Hb_001442_060--Hb_012760_100 Hb_002284_250 Hb_002284_250 Hb_000062_020--Hb_002284_250 Hb_004109_230 Hb_004109_230 Hb_000062_020--Hb_004109_230 Hb_004531_120 Hb_004531_120 Hb_000062_020--Hb_004531_120 Hb_001109_060 Hb_001109_060 Hb_000062_020--Hb_001109_060 Hb_000062_020--Hb_012760_100 Hb_000258_110 Hb_000258_110 Hb_000238_030--Hb_000258_110 Hb_000238_030--Hb_000001_170 Hb_102698_010 Hb_102698_010 Hb_000238_030--Hb_102698_010 Hb_012733_070 Hb_012733_070 Hb_000238_030--Hb_012733_070 Hb_086063_020 Hb_086063_020 Hb_000238_030--Hb_086063_020 Hb_039946_050 Hb_039946_050 Hb_000099_030--Hb_039946_050 Hb_000099_030--Hb_000238_030 Hb_000099_030--Hb_102698_010 Hb_000453_250 Hb_000453_250 Hb_000099_030--Hb_000453_250 Hb_000099_030--Hb_000001_170 Hb_056691_060--Hb_012760_100 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_060980_010 Hb_060980_010 Hb_000001_170--Hb_060980_010 Hb_012286_040 Hb_012286_040 Hb_000001_170--Hb_012286_040 Hb_000001_170--Hb_102698_010 Hb_002749_060 Hb_002749_060 Hb_000001_170--Hb_002749_060 Hb_000011_270 Hb_000011_270 Hb_000001_170--Hb_000011_270 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.02038 4.93713 2.69727 6.63142 4.43539 5.25114
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54616 2.67652 2.19738 6.23113 5.95861

CAGE analysis