Hb_001442_080

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig1442: 120344-121827
Sequence    

Annotation

kegg
ID tcc:TCM_037376
description Duplicated homeodomain-like superfamily protein
nr
ID BAG75107.1
description transcription factor MYB251 [Fagus crenata]
swissprot
ID P10290
description Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1
trembl
ID B5UAQ2
description Transcription factor MYB251 OS=Fagus crenata GN=FcMYB251 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11657: 120953-121434
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001442_080 0.0 transcription factor TF Family: MYB-related transcription factor MYB251 [Fagus crenata]
2 Hb_107258_010 0.052510844 - - hypothetical protein JCGZ_01141 [Jatropha curcas]
3 Hb_001863_290 0.0540814625 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Jatropha curcas]
4 Hb_004564_010 0.0606455527 - - receptor-kinase, putative [Ricinus communis]
5 Hb_178389_020 0.0667267071 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
6 Hb_064398_010 0.0718629323 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000483_020 0.0804657989 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
8 Hb_001288_010 0.0817082206 - - -
9 Hb_010712_020 0.0825616524 - - PREDICTED: caffeic acid 3-O-methyltransferase-like [Jatropha curcas]
10 Hb_012660_010 0.0830380379 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
11 Hb_011824_010 0.0861447371 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
12 Hb_002900_020 0.0883827419 - - hypothetical protein POPTR_0008s06270g [Populus trichocarpa]
13 Hb_002615_050 0.0980267328 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_146023_010 0.1002638461 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_007810_140 0.1028352884 - - Ankyrin repeat-containing protein [Medicago truncatula]
16 Hb_000281_200 0.1054665034 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
17 Hb_000160_230 0.1062801861 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
18 Hb_000859_040 0.1104720449 - - Early nodulin 16 precursor, putative [Ricinus communis]
19 Hb_000488_040 0.1109522705 - - unnamed protein product [Vitis vinifera]
20 Hb_000301_030 0.1119425529 - - PREDICTED: pectate lyase-like [Jatropha curcas]

Gene co-expression network

sample Hb_001442_080 Hb_001442_080 Hb_107258_010 Hb_107258_010 Hb_001442_080--Hb_107258_010 Hb_001863_290 Hb_001863_290 Hb_001442_080--Hb_001863_290 Hb_004564_010 Hb_004564_010 Hb_001442_080--Hb_004564_010 Hb_178389_020 Hb_178389_020 Hb_001442_080--Hb_178389_020 Hb_064398_010 Hb_064398_010 Hb_001442_080--Hb_064398_010 Hb_000483_020 Hb_000483_020 Hb_001442_080--Hb_000483_020 Hb_107258_010--Hb_001863_290 Hb_011824_010 Hb_011824_010 Hb_107258_010--Hb_011824_010 Hb_107258_010--Hb_004564_010 Hb_012660_010 Hb_012660_010 Hb_107258_010--Hb_012660_010 Hb_010712_020 Hb_010712_020 Hb_107258_010--Hb_010712_020 Hb_001863_290--Hb_011824_010 Hb_001863_290--Hb_010712_020 Hb_001863_290--Hb_004564_010 Hb_001863_290--Hb_064398_010 Hb_004564_010--Hb_178389_020 Hb_002615_050 Hb_002615_050 Hb_004564_010--Hb_002615_050 Hb_001288_010 Hb_001288_010 Hb_004564_010--Hb_001288_010 Hb_178389_020--Hb_001288_010 Hb_005356_010 Hb_005356_010 Hb_178389_020--Hb_005356_010 Hb_178389_020--Hb_107258_010 Hb_002900_020 Hb_002900_020 Hb_178389_020--Hb_002900_020 Hb_064398_010--Hb_010712_020 Hb_000487_170 Hb_000487_170 Hb_064398_010--Hb_000487_170 Hb_001141_170 Hb_001141_170 Hb_064398_010--Hb_001141_170 Hb_064398_010--Hb_107258_010 Hb_000483_020--Hb_002900_020 Hb_004592_020 Hb_004592_020 Hb_000483_020--Hb_004592_020 Hb_000488_040 Hb_000488_040 Hb_000483_020--Hb_000488_040 Hb_032717_030 Hb_032717_030 Hb_000483_020--Hb_032717_030 Hb_000483_020--Hb_178389_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.94798 0.119191 1.44581 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0303699 0.0566136 45.3203 0.755935

CAGE analysis