Hb_001444_010

Information

Type transcription factor
Description TF Family: DDT
Location Contig1444: 11838-20863
Sequence    

Annotation

kegg
ID rcu:RCOM_1763100
description hypothetical protein
nr
ID XP_012086480.1
description PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
swissprot
ID Q9NRL2
description Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens GN=BAZ1A PE=1 SV=2
trembl
ID A0A067K0I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23961 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11658: 10848-12377 , PASA_asmbl_11659: 10848-12189 , PASA_asmbl_11660: 17457-17661 , PASA_asmbl_11661: 17756-20669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001444_010 0.0 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
2 Hb_000025_110 0.0579431108 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
3 Hb_000618_030 0.0640094041 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
4 Hb_000913_050 0.06951527 - - hypothetical protein JCGZ_17329 [Jatropha curcas]
5 Hb_000679_130 0.0701729578 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_004994_040 0.072709669 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
7 Hb_000797_050 0.073708614 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
8 Hb_001488_410 0.0738517627 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
9 Hb_001599_030 0.0752435448 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
10 Hb_000606_090 0.0754632206 - - Far upstream element-binding protein, putative [Ricinus communis]
11 Hb_000367_130 0.0759612126 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000029_130 0.076121807 - - PREDICTED: ruvB-like protein 1 isoform X2 [Jatropha curcas]
13 Hb_010381_060 0.0766642032 - - DEAD-box ATP-dependent RNA helicase 20 -like protein [Gossypium arboreum]
14 Hb_020719_030 0.0770126158 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
15 Hb_003018_130 0.0781008797 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
16 Hb_003125_160 0.0784307728 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
17 Hb_023480_010 0.0787839705 - - cellular nucleic acid binding protein, putative [Ricinus communis]
18 Hb_004837_190 0.0801319425 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
19 Hb_007262_020 0.08068533 - - PREDICTED: protein AUXIN SIGNALING F-BOX 2-like [Jatropha curcas]
20 Hb_030131_040 0.0807114988 - - ribosome biogenesis protein tsr1, putative [Ricinus communis]

Gene co-expression network

sample Hb_001444_010 Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_001444_010--Hb_000025_110 Hb_000618_030 Hb_000618_030 Hb_001444_010--Hb_000618_030 Hb_000913_050 Hb_000913_050 Hb_001444_010--Hb_000913_050 Hb_000679_130 Hb_000679_130 Hb_001444_010--Hb_000679_130 Hb_004994_040 Hb_004994_040 Hb_001444_010--Hb_004994_040 Hb_000797_050 Hb_000797_050 Hb_001444_010--Hb_000797_050 Hb_006252_040 Hb_006252_040 Hb_000025_110--Hb_006252_040 Hb_000025_110--Hb_000618_030 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_009627_010 Hb_009627_010 Hb_000618_030--Hb_009627_010 Hb_001493_030 Hb_001493_030 Hb_000618_030--Hb_001493_030 Hb_000538_100 Hb_000538_100 Hb_000618_030--Hb_000538_100 Hb_000879_200 Hb_000879_200 Hb_000618_030--Hb_000879_200 Hb_001828_160 Hb_001828_160 Hb_000913_050--Hb_001828_160 Hb_000207_310 Hb_000207_310 Hb_000913_050--Hb_000207_310 Hb_000367_130 Hb_000367_130 Hb_000913_050--Hb_000367_130 Hb_000029_130 Hb_000029_130 Hb_000913_050--Hb_000029_130 Hb_000116_180 Hb_000116_180 Hb_000913_050--Hb_000116_180 Hb_000679_130--Hb_000367_130 Hb_000679_130--Hb_001599_030 Hb_007262_020 Hb_007262_020 Hb_000679_130--Hb_007262_020 Hb_006915_060 Hb_006915_060 Hb_000679_130--Hb_006915_060 Hb_011174_090 Hb_011174_090 Hb_004994_040--Hb_011174_090 Hb_007592_030 Hb_007592_030 Hb_004994_040--Hb_007592_030 Hb_004994_040--Hb_000618_030 Hb_002304_090 Hb_002304_090 Hb_004994_040--Hb_002304_090 Hb_004994_040--Hb_009627_010 Hb_008556_030 Hb_008556_030 Hb_000797_050--Hb_008556_030 Hb_000480_010 Hb_000480_010 Hb_000797_050--Hb_000480_010 Hb_000797_050--Hb_000679_130 Hb_135377_010 Hb_135377_010 Hb_000797_050--Hb_135377_010 Hb_001983_030 Hb_001983_030 Hb_000797_050--Hb_001983_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7007 6.79875 12.3021 10.8348 21.3054 24.722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5201 10.2488 12.0551 11.529 12.3945

CAGE analysis