Hb_001446_010

Information

Type -
Description -
Location Contig1446: 8800-13401
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001446_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000711_020 0.2515676128 - - major allergen Pru ar 1-like [Jatropha curcas]
3 Hb_057451_040 0.26091418 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_005396_060 0.2657572735 - - -
5 Hb_049275_010 0.2705803537 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
6 Hb_086607_010 0.2787860752 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_115656_010 0.2796286111 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
8 Hb_012305_090 0.288635723 - - hypothetical protein VITISV_018166 [Vitis vinifera]
9 Hb_002791_020 0.291826926 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
10 Hb_001660_020 0.3005346678 desease resistance Gene Name: NB-ARC hypothetical protein Csa_5G648130 [Cucumis sativus]
11 Hb_004212_040 0.3027938853 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_001282_030 0.3029688176 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
13 Hb_003944_020 0.3048617112 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
14 Hb_001085_210 0.3175047467 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
15 Hb_002025_090 0.3247718056 - - unnamed protein product [Coffea canephora]
16 Hb_012092_080 0.3254882587 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
17 Hb_001206_010 0.3274605093 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_001188_120 0.3280703406 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
19 Hb_001304_120 0.3282862936 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
20 Hb_006569_050 0.3286232793 - - -

Gene co-expression network

sample Hb_001446_010 Hb_001446_010 Hb_000711_020 Hb_000711_020 Hb_001446_010--Hb_000711_020 Hb_057451_040 Hb_057451_040 Hb_001446_010--Hb_057451_040 Hb_005396_060 Hb_005396_060 Hb_001446_010--Hb_005396_060 Hb_049275_010 Hb_049275_010 Hb_001446_010--Hb_049275_010 Hb_086607_010 Hb_086607_010 Hb_001446_010--Hb_086607_010 Hb_115656_010 Hb_115656_010 Hb_001446_010--Hb_115656_010 Hb_014548_030 Hb_014548_030 Hb_000711_020--Hb_014548_030 Hb_012305_090 Hb_012305_090 Hb_000711_020--Hb_012305_090 Hb_006569_050 Hb_006569_050 Hb_000711_020--Hb_006569_050 Hb_000711_020--Hb_049275_010 Hb_000711_020--Hb_086607_010 Hb_000268_100 Hb_000268_100 Hb_057451_040--Hb_000268_100 Hb_011478_010 Hb_011478_010 Hb_057451_040--Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_057451_040--Hb_003711_030 Hb_057451_040--Hb_115656_010 Hb_004212_040 Hb_004212_040 Hb_057451_040--Hb_004212_040 Hb_002025_090 Hb_002025_090 Hb_057451_040--Hb_002025_090 Hb_001341_020 Hb_001341_020 Hb_005396_060--Hb_001341_020 Hb_005396_060--Hb_012305_090 Hb_000022_140 Hb_000022_140 Hb_005396_060--Hb_000022_140 Hb_003944_020 Hb_003944_020 Hb_005396_060--Hb_003944_020 Hb_006452_240 Hb_006452_240 Hb_005396_060--Hb_006452_240 Hb_002226_050 Hb_002226_050 Hb_005396_060--Hb_002226_050 Hb_049275_010--Hb_005396_060 Hb_012092_080 Hb_012092_080 Hb_049275_010--Hb_012092_080 Hb_049275_010--Hb_000022_140 Hb_066487_010 Hb_066487_010 Hb_049275_010--Hb_066487_010 Hb_049275_010--Hb_006569_050 Hb_049275_010--Hb_003944_020 Hb_086607_010--Hb_012305_090 Hb_086607_010--Hb_005396_060 Hb_024411_010 Hb_024411_010 Hb_086607_010--Hb_024411_010 Hb_001282_030 Hb_001282_030 Hb_086607_010--Hb_001282_030 Hb_002729_020 Hb_002729_020 Hb_086607_010--Hb_002729_020 Hb_115656_010--Hb_001282_030 Hb_115656_010--Hb_004212_040 Hb_115656_010--Hb_002025_090 Hb_115656_010--Hb_012092_080 Hb_142570_010 Hb_142570_010 Hb_115656_010--Hb_142570_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00358347 0.00322259 0 0 0.00792014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.014943 0.0123092 0.0166747

CAGE analysis