Hb_001446_050

Information

Type -
Description -
Location Contig1446: 78276-82264
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID AAP44605.1
description putative polyprotein [Oryza sativa Japonica Group]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q7Y1M7
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBa0053G10.9 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001446_050 0.0 - - putative polyprotein [Oryza sativa Japonica Group]
2 Hb_010051_010 2.56378e-05 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_033123_010 7.46072e-05 - - Putative polyprotein [Oryza sativa Japonica Group]
4 Hb_025864_010 0.000283214 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_007332_010 0.0003551645 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_007014_020 0.0003847583 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_147844_010 0.0004009623 - - putative 60S ribosomal protein L37 [Aegilops tauschii]
8 Hb_010907_010 0.0004953976 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_007719_020 0.0005706977 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
10 Hb_004667_010 0.000598097 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_114981_010 0.000637422 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_012535_030 0.0007034267 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_144850_070 0.0007116232 - - OSJNBa0032N05.11 [Oryza sativa Japonica Group]
14 Hb_034066_010 0.0007566187 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_010132_070 0.0007845869 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_013781_010 0.0007975393 - - hypothetical protein VITISV_030726 [Vitis vinifera]
17 Hb_015337_010 0.0008324108 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_007251_010 0.000904539 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
19 Hb_007167_100 0.0011324482 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_001579_120 0.001198287 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001446_050 Hb_001446_050 Hb_010051_010 Hb_010051_010 Hb_001446_050--Hb_010051_010 Hb_033123_010 Hb_033123_010 Hb_001446_050--Hb_033123_010 Hb_025864_010 Hb_025864_010 Hb_001446_050--Hb_025864_010 Hb_007332_010 Hb_007332_010 Hb_001446_050--Hb_007332_010 Hb_007014_020 Hb_007014_020 Hb_001446_050--Hb_007014_020 Hb_147844_010 Hb_147844_010 Hb_001446_050--Hb_147844_010 Hb_010051_010--Hb_033123_010 Hb_010051_010--Hb_025864_010 Hb_010051_010--Hb_007332_010 Hb_010051_010--Hb_007014_020 Hb_010051_010--Hb_147844_010 Hb_033123_010--Hb_007332_010 Hb_033123_010--Hb_025864_010 Hb_033123_010--Hb_007014_020 Hb_033123_010--Hb_147844_010 Hb_025864_010--Hb_007014_020 Hb_025864_010--Hb_147844_010 Hb_010907_010 Hb_010907_010 Hb_025864_010--Hb_010907_010 Hb_007719_020 Hb_007719_020 Hb_025864_010--Hb_007719_020 Hb_013781_010 Hb_013781_010 Hb_007332_010--Hb_013781_010 Hb_015337_010 Hb_015337_010 Hb_007332_010--Hb_015337_010 Hb_007332_010--Hb_025864_010 Hb_007014_020--Hb_147844_010 Hb_007014_020--Hb_010907_010 Hb_007014_020--Hb_007719_020 Hb_004667_010 Hb_004667_010 Hb_007014_020--Hb_004667_010 Hb_114981_010 Hb_114981_010 Hb_007014_020--Hb_114981_010 Hb_147844_010--Hb_010907_010 Hb_147844_010--Hb_007719_020 Hb_147844_010--Hb_004667_010 Hb_147844_010--Hb_114981_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00415531 0.0223946

CAGE analysis