Hb_001449_030

Information

Type -
Description -
Location Contig1449: 78888-83893
Sequence    

Annotation

kegg
ID pop:POPTR_0005s01710g
description hypothetical protein
nr
ID XP_012088892.1
description PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
swissprot
ID Q5ZKQ3
description RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1
trembl
ID A0A067JV15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23222 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rna polymerase ii-associated protein 3 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11681: 78770-79796 , PASA_asmbl_11682: 84185-90543 , PASA_asmbl_11683: 84185-89953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_030 0.0 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Jatropha curcas]
2 Hb_002498_260 0.198225298 - - PREDICTED: putative lactoylglutathione lyase [Jatropha curcas]
3 Hb_010984_040 0.2002535908 - - hypothetical protein M569_17286, partial [Genlisea aurea]
4 Hb_004525_050 0.2085364126 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
5 Hb_000997_380 0.2173398474 - - PREDICTED: armadillo repeat-containing protein LFR [Jatropha curcas]
6 Hb_000016_060 0.2327180504 - - mads box protein, putative [Ricinus communis]
7 Hb_000294_050 0.2410924184 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
8 Hb_002073_010 0.2469320844 - - -
9 Hb_080104_010 0.2497785126 - - unnamed protein product [Vitis vinifera]
10 Hb_000086_410 0.2526787336 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
11 Hb_166053_010 0.2565343988 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
12 Hb_011942_060 0.2588409236 - - hypothetical protein CISIN_1g028965mg [Citrus sinensis]
13 Hb_002760_050 0.2603534007 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003994_020 0.2611927007 - - -
15 Hb_000004_010 0.2626282508 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
16 Hb_000345_080 0.2633934556 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
17 Hb_148130_020 0.2650394497 - - -
18 Hb_178968_040 0.2653923653 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002477_050 0.2677625869 - - unnamed protein product [Coffea canephora]
20 Hb_006153_030 0.2681926232 - - PREDICTED: probable transaldolase [Jatropha curcas]

Gene co-expression network

sample Hb_001449_030 Hb_001449_030 Hb_002498_260 Hb_002498_260 Hb_001449_030--Hb_002498_260 Hb_010984_040 Hb_010984_040 Hb_001449_030--Hb_010984_040 Hb_004525_050 Hb_004525_050 Hb_001449_030--Hb_004525_050 Hb_000997_380 Hb_000997_380 Hb_001449_030--Hb_000997_380 Hb_000016_060 Hb_000016_060 Hb_001449_030--Hb_000016_060 Hb_000294_050 Hb_000294_050 Hb_001449_030--Hb_000294_050 Hb_048476_060 Hb_048476_060 Hb_002498_260--Hb_048476_060 Hb_005054_220 Hb_005054_220 Hb_002498_260--Hb_005054_220 Hb_001999_100 Hb_001999_100 Hb_002498_260--Hb_001999_100 Hb_000008_190 Hb_000008_190 Hb_002498_260--Hb_000008_190 Hb_148130_020 Hb_148130_020 Hb_002498_260--Hb_148130_020 Hb_003669_010 Hb_003669_010 Hb_002498_260--Hb_003669_010 Hb_010984_040--Hb_004525_050 Hb_100137_010 Hb_100137_010 Hb_010984_040--Hb_100137_010 Hb_006634_110 Hb_006634_110 Hb_010984_040--Hb_006634_110 Hb_009083_030 Hb_009083_030 Hb_010984_040--Hb_009083_030 Hb_048702_010 Hb_048702_010 Hb_010984_040--Hb_048702_010 Hb_121694_010 Hb_121694_010 Hb_010984_040--Hb_121694_010 Hb_002760_050 Hb_002760_050 Hb_004525_050--Hb_002760_050 Hb_004525_050--Hb_048702_010 Hb_004525_050--Hb_100137_010 Hb_004525_050--Hb_006634_110 Hb_000950_030 Hb_000950_030 Hb_004525_050--Hb_000950_030 Hb_017002_010 Hb_017002_010 Hb_000997_380--Hb_017002_010 Hb_000997_380--Hb_004525_050 Hb_005144_170 Hb_005144_170 Hb_000997_380--Hb_005144_170 Hb_000997_380--Hb_010984_040 Hb_000997_380--Hb_006634_110 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130 Hb_001195_070 Hb_001195_070 Hb_000294_050--Hb_001195_070 Hb_007477_050 Hb_007477_050 Hb_000294_050--Hb_007477_050 Hb_003103_010 Hb_003103_010 Hb_000294_050--Hb_003103_010 Hb_000175_260 Hb_000175_260 Hb_000294_050--Hb_000175_260 Hb_000345_080 Hb_000345_080 Hb_000294_050--Hb_000345_080 Hb_000294_050--Hb_006153_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0166777 0 0.0255727 0.270201 0.0167177 0.0518338
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.114196 0.029944 0 0.0719025 0.06215

CAGE analysis