Hb_001449_040

Information

Type -
Description -
Location Contig1449: 84177-90855
Sequence    

Annotation

kegg
ID rcu:RCOM_1435310
description hypothetical protein
nr
ID XP_012088897.1
description PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RFJ6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435310 PE=4 SV=1
Gene Ontology
ID GO:0031011
description swr1 complex subunit 2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11682: 84185-90543 , PASA_asmbl_11683: 84185-89953 , PASA_asmbl_11684: 88699-88854
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_040 0.0 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
2 Hb_056691_060 0.0668427363 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
3 Hb_000008_290 0.0682367487 - - PREDICTED: protein SAND [Jatropha curcas]
4 Hb_000613_050 0.0705207859 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
5 Hb_001496_070 0.0715621907 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
6 Hb_001343_040 0.0715718942 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
7 Hb_005901_020 0.0715733456 - - PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1 [Jatropha curcas]
8 Hb_000236_310 0.0719123253 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Malus domestica]
9 Hb_000592_030 0.0740125674 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
10 Hb_000053_040 0.0759119318 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
11 Hb_001199_100 0.078792068 - - PREDICTED: uncharacterized protein LOC105639813 [Jatropha curcas]
12 Hb_009193_120 0.0808378541 desease resistance Gene Name: AAA_22 PREDICTED: putative ATP-dependent RNA helicase DHX33 [Jatropha curcas]
13 Hb_000174_180 0.0811490748 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002815_030 0.0812828964 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
15 Hb_012733_030 0.081374023 - - hypothetical protein OsI_15243 [Oryza sativa Indica Group]
16 Hb_000872_010 0.084058788 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
17 Hb_002600_150 0.0851898898 - - PREDICTED: uncharacterized protein LOC105646805 isoform X1 [Jatropha curcas]
18 Hb_017358_040 0.0865763867 - - PREDICTED: RNA-dependent RNA polymerase 6-like [Jatropha curcas]
19 Hb_003253_040 0.0866750804 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
20 Hb_003544_140 0.0869554099 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001449_040 Hb_001449_040 Hb_056691_060 Hb_056691_060 Hb_001449_040--Hb_056691_060 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_000613_050 Hb_000613_050 Hb_001449_040--Hb_000613_050 Hb_001496_070 Hb_001496_070 Hb_001449_040--Hb_001496_070 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_005901_020 Hb_005901_020 Hb_001449_040--Hb_005901_020 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_002815_030 Hb_002815_030 Hb_000008_290--Hb_002815_030 Hb_000592_030 Hb_000592_030 Hb_000008_290--Hb_000592_030 Hb_000890_060 Hb_000890_060 Hb_000008_290--Hb_000890_060 Hb_000008_290--Hb_000613_050 Hb_000617_180 Hb_000617_180 Hb_000008_290--Hb_000617_180 Hb_123903_010 Hb_123903_010 Hb_000008_290--Hb_123903_010 Hb_000613_050--Hb_001343_040 Hb_000613_050--Hb_000592_030 Hb_002213_070 Hb_002213_070 Hb_000613_050--Hb_002213_070 Hb_001199_100 Hb_001199_100 Hb_000613_050--Hb_001199_100 Hb_000613_050--Hb_002815_030 Hb_002493_020 Hb_002493_020 Hb_001496_070--Hb_002493_020 Hb_001496_070--Hb_005901_020 Hb_000362_150 Hb_000362_150 Hb_001496_070--Hb_000362_150 Hb_000983_150 Hb_000983_150 Hb_001496_070--Hb_000983_150 Hb_002974_060 Hb_002974_060 Hb_001496_070--Hb_002974_060 Hb_001343_040--Hb_002815_030 Hb_001343_040--Hb_000592_030 Hb_000395_070 Hb_000395_070 Hb_001343_040--Hb_000395_070 Hb_001814_030 Hb_001814_030 Hb_001343_040--Hb_001814_030 Hb_012395_140 Hb_012395_140 Hb_001343_040--Hb_012395_140 Hb_005901_020--Hb_001199_100 Hb_003253_040 Hb_003253_040 Hb_005901_020--Hb_003253_040 Hb_004032_380 Hb_004032_380 Hb_005901_020--Hb_004032_380 Hb_003294_090 Hb_003294_090 Hb_005901_020--Hb_003294_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.612 23.7305 13.0663 27.8482 29.499 44.3863
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.0518 17.5709 25.7273 40.6224 41.4613

CAGE analysis