Hb_001449_060

Information

Type -
Description -
Location Contig1449: 99335-102510
Sequence    

Annotation

kegg
ID rcu:RCOM_1435340
description kelch repeat protein, putative
nr
ID XP_002512518.1
description kelch repeat protein, putative [Ricinus communis]
swissprot
ID Q5EA50
description Rab9 effector protein with kelch motifs OS=Bos taurus GN=RABEPK PE=2 SV=1
trembl
ID B9RFJ9
description Kelch repeat protein, putative OS=Ricinus communis GN=RCOM_1435340 PE=4 SV=1
Gene Ontology
ID GO:0005515
description acyl- -binding domain-containing protein 4-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_060 0.0 - - kelch repeat protein, putative [Ricinus communis]
2 Hb_003098_010 0.2044961247 - - -
3 Hb_005730_130 0.2267537437 - - PRA1 family protein [Theobroma cacao]
4 Hb_001077_020 0.2348413053 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
5 Hb_076038_010 0.2531615792 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000311_030 0.2663604566 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
7 Hb_002847_020 0.2790815994 - - hypothetical protein JCGZ_23832 [Jatropha curcas]
8 Hb_161994_040 0.2795444535 - - -
9 Hb_000438_150 0.282691575 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
10 Hb_002196_010 0.2883832127 - - PREDICTED: LOW QUALITY PROTEIN: proline-rich receptor-like protein kinase PERK1 [Jatropha curcas]
11 Hb_002235_270 0.2905054928 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
12 Hb_123560_030 0.2907990883 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_001493_010 0.2947331312 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
14 Hb_003673_050 0.2967315257 - - hypothetical protein POPTR_0001s40990g [Populus trichocarpa]
15 Hb_025595_010 0.2976105008 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
16 Hb_065841_010 0.2991099658 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
17 Hb_099046_010 0.2999949469 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
18 Hb_001195_080 0.3004562712 - - PREDICTED: uncharacterized protein LOC105633814 [Jatropha curcas]
19 Hb_003203_020 0.3017802006 - - unknown [Lotus japonicus]
20 Hb_000377_140 0.3022596646 - - -

Gene co-expression network

sample Hb_001449_060 Hb_001449_060 Hb_003098_010 Hb_003098_010 Hb_001449_060--Hb_003098_010 Hb_005730_130 Hb_005730_130 Hb_001449_060--Hb_005730_130 Hb_001077_020 Hb_001077_020 Hb_001449_060--Hb_001077_020 Hb_076038_010 Hb_076038_010 Hb_001449_060--Hb_076038_010 Hb_000311_030 Hb_000311_030 Hb_001449_060--Hb_000311_030 Hb_002847_020 Hb_002847_020 Hb_001449_060--Hb_002847_020 Hb_000035_280 Hb_000035_280 Hb_003098_010--Hb_000035_280 Hb_000242_020 Hb_000242_020 Hb_003098_010--Hb_000242_020 Hb_003098_010--Hb_000311_030 Hb_006642_030 Hb_006642_030 Hb_003098_010--Hb_006642_030 Hb_113084_010 Hb_113084_010 Hb_003098_010--Hb_113084_010 Hb_000258_320 Hb_000258_320 Hb_005730_130--Hb_000258_320 Hb_000544_180 Hb_000544_180 Hb_005730_130--Hb_000544_180 Hb_010560_060 Hb_010560_060 Hb_005730_130--Hb_010560_060 Hb_009693_030 Hb_009693_030 Hb_005730_130--Hb_009693_030 Hb_000098_020 Hb_000098_020 Hb_005730_130--Hb_000098_020 Hb_003177_010 Hb_003177_010 Hb_005730_130--Hb_003177_010 Hb_001077_020--Hb_002847_020 Hb_085892_020 Hb_085892_020 Hb_001077_020--Hb_085892_020 Hb_001195_080 Hb_001195_080 Hb_001077_020--Hb_001195_080 Hb_123560_030 Hb_123560_030 Hb_001077_020--Hb_123560_030 Hb_000794_040 Hb_000794_040 Hb_001077_020--Hb_000794_040 Hb_000243_020 Hb_000243_020 Hb_076038_010--Hb_000243_020 Hb_001277_160 Hb_001277_160 Hb_076038_010--Hb_001277_160 Hb_100105_010 Hb_100105_010 Hb_076038_010--Hb_100105_010 Hb_001277_190 Hb_001277_190 Hb_076038_010--Hb_001277_190 Hb_075230_010 Hb_075230_010 Hb_076038_010--Hb_075230_010 Hb_161994_040 Hb_161994_040 Hb_000311_030--Hb_161994_040 Hb_000311_030--Hb_006642_030 Hb_008054_050 Hb_008054_050 Hb_000311_030--Hb_008054_050 Hb_065841_010 Hb_065841_010 Hb_000311_030--Hb_065841_010 Hb_068569_010 Hb_068569_010 Hb_000311_030--Hb_068569_010 Hb_013358_100 Hb_013358_100 Hb_000311_030--Hb_013358_100 Hb_002847_020--Hb_001195_080 Hb_010770_010 Hb_010770_010 Hb_002847_020--Hb_010770_010 Hb_176844_010 Hb_176844_010 Hb_002847_020--Hb_176844_010 Hb_000624_020 Hb_000624_020 Hb_002847_020--Hb_000624_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.708823 0.269195 0.0629088 0.526852 0.0550573 0.157233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12769 0.0669816 0 0.0266352 0

CAGE analysis