Hb_001449_070

Information

Type -
Description -
Location Contig1449: 104406-110192
Sequence    

Annotation

kegg
ID rcu:RCOM_1435350
description hypothetical protein
nr
ID XP_002512519.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8W4E7
description Solute carrier family 40 member 3, chloroplastic OS=Arabidopsis thaliana GN=IREG3 PE=1 SV=1
trembl
ID B9RFK0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1435350 PE=4 SV=1
Gene Ontology
ID GO:0016021
description solute carrier family 40 member chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11685: 104483-105041 , PASA_asmbl_11686: 105103-107397 , PASA_asmbl_11687: 107412-110019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000613_110 0.0800100676 - - PREDICTED: uncharacterized protein LOC105641540 [Jatropha curcas]
3 Hb_007054_070 0.0911632941 - - PREDICTED: probable monodehydroascorbate reductase, cytoplasmic isoform 2 [Jatropha curcas]
4 Hb_000189_450 0.0918153769 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
5 Hb_002232_390 0.0925080639 - - PREDICTED: uncharacterized protein LOC105635994 [Jatropha curcas]
6 Hb_000077_150 0.0964310078 - - PREDICTED: riboflavin synthase [Jatropha curcas]
7 Hb_001214_050 0.0974994895 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
8 Hb_003475_020 0.0981493488 - - hypothetical protein JCGZ_13177 [Jatropha curcas]
9 Hb_009767_130 0.0989170031 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
10 Hb_003106_190 0.0999395539 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
11 Hb_000941_100 0.1007916321 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
12 Hb_004644_030 0.1026673175 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
13 Hb_001195_770 0.1036977063 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
14 Hb_003053_110 0.1044252555 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
15 Hb_000816_200 0.1062269837 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_016461_030 0.1063095 - - PREDICTED: putative leucine--tRNA ligase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_009778_060 0.1072847695 - - PREDICTED: uncharacterized protein LOC105636987 [Jatropha curcas]
18 Hb_009178_060 0.1075166463 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000327_110 0.1076787376 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
20 Hb_000032_500 0.109214621 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]

Gene co-expression network

sample Hb_001449_070 Hb_001449_070 Hb_000613_110 Hb_000613_110 Hb_001449_070--Hb_000613_110 Hb_007054_070 Hb_007054_070 Hb_001449_070--Hb_007054_070 Hb_000189_450 Hb_000189_450 Hb_001449_070--Hb_000189_450 Hb_002232_390 Hb_002232_390 Hb_001449_070--Hb_002232_390 Hb_000077_150 Hb_000077_150 Hb_001449_070--Hb_000077_150 Hb_001214_050 Hb_001214_050 Hb_001449_070--Hb_001214_050 Hb_005731_160 Hb_005731_160 Hb_000613_110--Hb_005731_160 Hb_002811_010 Hb_002811_010 Hb_000613_110--Hb_002811_010 Hb_032920_050 Hb_032920_050 Hb_000613_110--Hb_032920_050 Hb_003106_190 Hb_003106_190 Hb_000613_110--Hb_003106_190 Hb_003994_110 Hb_003994_110 Hb_000613_110--Hb_003994_110 Hb_002685_060 Hb_002685_060 Hb_007054_070--Hb_002685_060 Hb_016461_030 Hb_016461_030 Hb_007054_070--Hb_016461_030 Hb_007054_070--Hb_000189_450 Hb_005276_010 Hb_005276_010 Hb_007054_070--Hb_005276_010 Hb_009767_130 Hb_009767_130 Hb_007054_070--Hb_009767_130 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000816_200 Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_016219_030 Hb_016219_030 Hb_000189_450--Hb_016219_030 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_009178_060 Hb_009178_060 Hb_002232_390--Hb_009178_060 Hb_000645_280 Hb_000645_280 Hb_002232_390--Hb_000645_280 Hb_003475_020 Hb_003475_020 Hb_002232_390--Hb_003475_020 Hb_000684_210 Hb_000684_210 Hb_002232_390--Hb_000684_210 Hb_007763_070 Hb_007763_070 Hb_002232_390--Hb_007763_070 Hb_004644_030 Hb_004644_030 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_000077_150--Hb_001214_050 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_000077_150--Hb_002811_010 Hb_001214_050--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57618 4.05778 7.33428 7.84112 3.38452 6.6111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.19995 6.5668 5.01563 4.94934 19.603

CAGE analysis