Hb_001449_100

Information

Type -
Description -
Location Contig1449: 126236-126856
Sequence    

Annotation

kegg
ID rcu:RCOM_1435500
description transcription factor, putative
nr
ID XP_012088908.1
description PREDICTED: transcription factor bHLH149 [Jatropha curcas]
swissprot
ID O80482
description Transcription factor bHLH149 OS=Arabidopsis thaliana GN=BHLH149 PE=1 SV=1
trembl
ID A0A067JKQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23231 PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor bhlh149-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11689: 125848-126426
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001449_100 0.0 - - PREDICTED: transcription factor bHLH149 [Jatropha curcas]
2 Hb_028271_020 0.1162625252 - - acyl-CoA oxidase, putative [Ricinus communis]
3 Hb_004679_060 0.1561837816 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002784_100 0.1678454458 - - PREDICTED: uncharacterized protein LOC105631246 [Jatropha curcas]
5 Hb_011609_110 0.1681413617 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
6 Hb_003398_020 0.1771203041 - - PREDICTED: uncharacterized protein LOC105647439 [Jatropha curcas]
7 Hb_007017_010 0.1779068873 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
8 Hb_033834_050 0.1792731696 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000289_070 0.1817090546 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003057_020 0.1852033789 - - 40S ribosomal protein S23, putative [Ricinus communis]
11 Hb_007313_080 0.1897170464 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
12 Hb_002235_080 0.1920355106 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
13 Hb_007245_080 0.1968789697 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
14 Hb_003540_200 0.1980861734 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
15 Hb_000099_070 0.1989401721 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
16 Hb_043623_010 0.2004565968 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
17 Hb_003376_380 0.2010104014 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]
18 Hb_002908_070 0.2018009753 - - DNA gyrase subunit A, chloroplast/mitochondrial precursor, putative [Ricinus communis]
19 Hb_002900_130 0.2020244225 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
20 Hb_000788_010 0.2063518197 - - 40S ribosomal protein S16A [Hevea brasiliensis]

Gene co-expression network

sample Hb_001449_100 Hb_001449_100 Hb_028271_020 Hb_028271_020 Hb_001449_100--Hb_028271_020 Hb_004679_060 Hb_004679_060 Hb_001449_100--Hb_004679_060 Hb_002784_100 Hb_002784_100 Hb_001449_100--Hb_002784_100 Hb_011609_110 Hb_011609_110 Hb_001449_100--Hb_011609_110 Hb_003398_020 Hb_003398_020 Hb_001449_100--Hb_003398_020 Hb_007017_010 Hb_007017_010 Hb_001449_100--Hb_007017_010 Hb_028271_020--Hb_002784_100 Hb_012053_010 Hb_012053_010 Hb_028271_020--Hb_012053_010 Hb_003540_200 Hb_003540_200 Hb_028271_020--Hb_003540_200 Hb_033834_050 Hb_033834_050 Hb_028271_020--Hb_033834_050 Hb_000997_190 Hb_000997_190 Hb_028271_020--Hb_000997_190 Hb_170426_010 Hb_170426_010 Hb_004679_060--Hb_170426_010 Hb_007313_080 Hb_007313_080 Hb_004679_060--Hb_007313_080 Hb_000189_540 Hb_000189_540 Hb_004679_060--Hb_000189_540 Hb_020805_060 Hb_020805_060 Hb_004679_060--Hb_020805_060 Hb_004787_040 Hb_004787_040 Hb_004679_060--Hb_004787_040 Hb_002784_100--Hb_033834_050 Hb_000656_410 Hb_000656_410 Hb_002784_100--Hb_000656_410 Hb_002784_100--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_002784_100--Hb_042871_010 Hb_011609_110--Hb_033834_050 Hb_011609_110--Hb_000656_410 Hb_011609_110--Hb_042871_010 Hb_011609_110--Hb_028271_020 Hb_000239_110 Hb_000239_110 Hb_003398_020--Hb_000239_110 Hb_003376_380 Hb_003376_380 Hb_003398_020--Hb_003376_380 Hb_004429_110 Hb_004429_110 Hb_003398_020--Hb_004429_110 Hb_003398_020--Hb_007313_080 Hb_002900_130 Hb_002900_130 Hb_003398_020--Hb_002900_130 Hb_002235_080 Hb_002235_080 Hb_007017_010--Hb_002235_080 Hb_003327_050 Hb_003327_050 Hb_007017_010--Hb_003327_050 Hb_000028_100 Hb_000028_100 Hb_007017_010--Hb_000028_100 Hb_000487_230 Hb_000487_230 Hb_007017_010--Hb_000487_230 Hb_000099_070 Hb_000099_070 Hb_007017_010--Hb_000099_070 Hb_183612_060 Hb_183612_060 Hb_007017_010--Hb_183612_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1576 37.9486 32.7914 37.9462 7.0743 4.54779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.5489 286.954 26.7825 62.3971 23.7765

CAGE analysis