Hb_001450_010

Information

Type -
Description -
Location Contig1450: 37152-38589
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID XP_011659859.1
description PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID A5BID8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015625 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001450_010 0.0 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
2 Hb_154726_010 0.22345458 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
3 Hb_000614_270 0.224137255 - - -
4 Hb_131102_010 0.2279788774 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000011_470 0.2376547158 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
6 Hb_001158_010 0.2439334915 - - hypothetical protein, partial [Pseudomonas fluorescens]
7 Hb_183191_020 0.2444429104 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000060_060 0.2477567958 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
9 Hb_088080_030 0.249522803 - - ribosomal protein S4 [Hevea brasiliensis]
10 Hb_002482_050 0.2528772424 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
11 Hb_000268_100 0.253755941 - - -
12 Hb_004987_030 0.2543827011 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
13 Hb_062192_060 0.2546271912 - - maturase (mitochondrion) [Hevea brasiliensis]
14 Hb_013420_090 0.2555138445 - - BnaCnng13090D [Brassica napus]
15 Hb_029238_030 0.2561164003 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
16 Hb_143004_010 0.25800929 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
17 Hb_171685_030 0.2592694337 - - URF-1 [Citrullus lanatus]
18 Hb_027357_010 0.260058601 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003375_050 0.2625500028 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003362_020 0.2693678174 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001450_010 Hb_001450_010 Hb_154726_010 Hb_154726_010 Hb_001450_010--Hb_154726_010 Hb_000614_270 Hb_000614_270 Hb_001450_010--Hb_000614_270 Hb_131102_010 Hb_131102_010 Hb_001450_010--Hb_131102_010 Hb_000011_470 Hb_000011_470 Hb_001450_010--Hb_000011_470 Hb_001158_010 Hb_001158_010 Hb_001450_010--Hb_001158_010 Hb_183191_020 Hb_183191_020 Hb_001450_010--Hb_183191_020 Hb_003375_050 Hb_003375_050 Hb_154726_010--Hb_003375_050 Hb_041813_050 Hb_041813_050 Hb_154726_010--Hb_041813_050 Hb_017075_020 Hb_017075_020 Hb_154726_010--Hb_017075_020 Hb_057638_010 Hb_057638_010 Hb_154726_010--Hb_057638_010 Hb_100288_010 Hb_100288_010 Hb_154726_010--Hb_100288_010 Hb_000060_060 Hb_000060_060 Hb_000614_270--Hb_000060_060 Hb_003746_020 Hb_003746_020 Hb_000614_270--Hb_003746_020 Hb_104735_010 Hb_104735_010 Hb_000614_270--Hb_104735_010 Hb_002482_050 Hb_002482_050 Hb_000614_270--Hb_002482_050 Hb_143004_010 Hb_143004_010 Hb_000614_270--Hb_143004_010 Hb_062192_060 Hb_062192_060 Hb_000614_270--Hb_062192_060 Hb_133820_010 Hb_133820_010 Hb_131102_010--Hb_133820_010 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_019656_010 Hb_019656_010 Hb_131102_010--Hb_019656_010 Hb_043708_010 Hb_043708_010 Hb_131102_010--Hb_043708_010 Hb_004650_060 Hb_004650_060 Hb_131102_010--Hb_004650_060 Hb_000405_010 Hb_000405_010 Hb_000011_470--Hb_000405_010 Hb_029238_030 Hb_029238_030 Hb_000011_470--Hb_029238_030 Hb_011892_010 Hb_011892_010 Hb_000011_470--Hb_011892_010 Hb_011931_090 Hb_011931_090 Hb_000011_470--Hb_011931_090 Hb_054127_020 Hb_054127_020 Hb_000011_470--Hb_054127_020 Hb_151401_010 Hb_151401_010 Hb_000011_470--Hb_151401_010 Hb_006474_010 Hb_006474_010 Hb_001158_010--Hb_006474_010 Hb_001158_010--Hb_183191_020 Hb_001158_010--Hb_143004_010 Hb_001158_010--Hb_000060_060 Hb_004987_030 Hb_004987_030 Hb_001158_010--Hb_004987_030 Hb_042463_020 Hb_042463_020 Hb_183191_020--Hb_042463_020 Hb_062192_030 Hb_062192_030 Hb_183191_020--Hb_062192_030 Hb_156746_010 Hb_156746_010 Hb_183191_020--Hb_156746_010 Hb_034168_070 Hb_034168_070 Hb_183191_020--Hb_034168_070 Hb_072212_020 Hb_072212_020 Hb_183191_020--Hb_072212_020 Hb_183191_020--Hb_004987_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0147978 0 0 0 0.0187002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0406922 0.032009 0.0595378 0.0897615 0.728586

CAGE analysis