Hb_001450_020

Information

Type -
Description -
Location Contig1450: 42929-47584
Sequence    

Annotation

kegg
ID rcu:RCOM_1382780
description pyruvate kinase, putative (EC:2.7.1.40)
nr
ID XP_012093184.1
description PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
swissprot
ID Q43117
description Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1
trembl
ID A0A067LIT7
description Pyruvate kinase OS=Jatropha curcas GN=JCGZ_16388 PE=3 SV=1
Gene Ontology
ID GO:0000287
description pyruvate kinase isozyme chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11707: 43628-47285
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001450_020 0.0 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
2 Hb_004013_030 0.0791382473 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
3 Hb_006588_160 0.0881853433 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000154_050 0.0921769677 - - CMP-sialic acid transporter, putative [Ricinus communis]
5 Hb_000497_190 0.0933177325 - - sterol isomerase, putative [Ricinus communis]
6 Hb_004032_370 0.095170114 - - pyrophosphate-dependent phosphofructokinase [Hevea brasiliensis]
7 Hb_001279_090 0.0972354561 - - PREDICTED: uncharacterized protein LOC105633322 [Jatropha curcas]
8 Hb_000331_140 0.1058085892 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
9 Hb_000724_020 0.1082137628 transcription factor TF Family: PHD PREDICTED: probable Histone-lysine N-methyltransferase ATXR5 [Jatropha curcas]
10 Hb_001053_080 0.1103241318 - - OsCesA3 protein [Morus notabilis]
11 Hb_000098_240 0.1116668028 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
12 Hb_000808_210 0.1119760921 - - hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
13 Hb_002837_040 0.1122265203 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
14 Hb_016448_010 0.1136175589 - - Protein MYG1, putative [Ricinus communis]
15 Hb_005649_100 0.1146289258 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
16 Hb_000940_050 0.114859985 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
17 Hb_000358_210 0.1158401073 - - oligosaccharyl transferase, putative [Ricinus communis]
18 Hb_004096_060 0.1163712443 - - PREDICTED: probable dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase isoform X2 [Jatropha curcas]
19 Hb_032823_020 0.1188854356 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000739_240 0.1194299826 - - PREDICTED: armadillo repeat-containing kinesin-like protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001450_020 Hb_001450_020 Hb_004013_030 Hb_004013_030 Hb_001450_020--Hb_004013_030 Hb_006588_160 Hb_006588_160 Hb_001450_020--Hb_006588_160 Hb_000154_050 Hb_000154_050 Hb_001450_020--Hb_000154_050 Hb_000497_190 Hb_000497_190 Hb_001450_020--Hb_000497_190 Hb_004032_370 Hb_004032_370 Hb_001450_020--Hb_004032_370 Hb_001279_090 Hb_001279_090 Hb_001450_020--Hb_001279_090 Hb_004013_030--Hb_006588_160 Hb_004013_030--Hb_000154_050 Hb_006816_190 Hb_006816_190 Hb_004013_030--Hb_006816_190 Hb_000331_140 Hb_000331_140 Hb_004013_030--Hb_000331_140 Hb_074399_010 Hb_074399_010 Hb_004013_030--Hb_074399_010 Hb_006588_160--Hb_000154_050 Hb_000001_090 Hb_000001_090 Hb_006588_160--Hb_000001_090 Hb_001053_080 Hb_001053_080 Hb_006588_160--Hb_001053_080 Hb_002837_040 Hb_002837_040 Hb_006588_160--Hb_002837_040 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000261_210 Hb_000261_210 Hb_000154_050--Hb_000261_210 Hb_004724_390 Hb_004724_390 Hb_000497_190--Hb_004724_390 Hb_161568_010 Hb_161568_010 Hb_000497_190--Hb_161568_010 Hb_000497_190--Hb_000261_210 Hb_000497_190--Hb_000154_050 Hb_005730_010 Hb_005730_010 Hb_000497_190--Hb_005730_010 Hb_004096_060 Hb_004096_060 Hb_004032_370--Hb_004096_060 Hb_000724_020 Hb_000724_020 Hb_004032_370--Hb_000724_020 Hb_002870_020 Hb_002870_020 Hb_004032_370--Hb_002870_020 Hb_003228_100 Hb_003228_100 Hb_004032_370--Hb_003228_100 Hb_002326_110 Hb_002326_110 Hb_004032_370--Hb_002326_110 Hb_077026_010 Hb_077026_010 Hb_004032_370--Hb_077026_010 Hb_001279_090--Hb_001053_080 Hb_001279_020 Hb_001279_020 Hb_001279_090--Hb_001279_020 Hb_000808_210 Hb_000808_210 Hb_001279_090--Hb_000808_210 Hb_000302_190 Hb_000302_190 Hb_001279_090--Hb_000302_190 Hb_000358_210 Hb_000358_210 Hb_001279_090--Hb_000358_210 Hb_070624_010 Hb_070624_010 Hb_001279_090--Hb_070624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.14027 3.60965 17.7358 9.53262 6.83816 5.03674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.76743 1.82825 3.1799 7.3344 7.71909

CAGE analysis