Hb_001450_030

Information

Type -
Description -
Location Contig1450: 48679-51319
Sequence    

Annotation

kegg
ID rcu:RCOM_1382800
description hypothetical protein
nr
ID XP_012093181.1
description PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16386 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11708: 48603-51560
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001450_030 0.0 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
2 Hb_000008_370 0.1298594283 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
3 Hb_001767_060 0.1331786408 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000390_090 0.1493343303 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
5 Hb_000152_210 0.1507589412 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000176_010 0.1589173678 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
7 Hb_003181_060 0.1589593868 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
8 Hb_009780_050 0.1601897485 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
9 Hb_000740_040 0.1614879613 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
10 Hb_000523_110 0.1648872018 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
11 Hb_154038_020 0.1651701132 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
12 Hb_027298_010 0.1655518244 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001301_340 0.1713148438 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
14 Hb_000877_080 0.1723414639 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
15 Hb_000879_230 0.1728182857 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
16 Hb_015807_160 0.1730820533 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
17 Hb_000005_300 0.1734949666 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000035_240 0.1736294998 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009252_060 0.1740980916 - - PREDICTED: uncharacterized protein LOC105640395 [Jatropha curcas]
20 Hb_000723_340 0.1750110771 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 [Jatropha curcas]

Gene co-expression network

sample Hb_001450_030 Hb_001450_030 Hb_000008_370 Hb_000008_370 Hb_001450_030--Hb_000008_370 Hb_001767_060 Hb_001767_060 Hb_001450_030--Hb_001767_060 Hb_000390_090 Hb_000390_090 Hb_001450_030--Hb_000390_090 Hb_000152_210 Hb_000152_210 Hb_001450_030--Hb_000152_210 Hb_000176_010 Hb_000176_010 Hb_001450_030--Hb_000176_010 Hb_003181_060 Hb_003181_060 Hb_001450_030--Hb_003181_060 Hb_000035_240 Hb_000035_240 Hb_000008_370--Hb_000035_240 Hb_000008_370--Hb_000390_090 Hb_009252_060 Hb_009252_060 Hb_000008_370--Hb_009252_060 Hb_001301_340 Hb_001301_340 Hb_000008_370--Hb_001301_340 Hb_068194_010 Hb_068194_010 Hb_000008_370--Hb_068194_010 Hb_093458_010 Hb_093458_010 Hb_001767_060--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_000413_240 Hb_000413_240 Hb_000390_090--Hb_000413_240 Hb_000390_090--Hb_009252_060 Hb_000413_060 Hb_000413_060 Hb_000390_090--Hb_000413_060 Hb_000163_100 Hb_000163_100 Hb_000390_090--Hb_000163_100 Hb_001073_080 Hb_001073_080 Hb_000390_090--Hb_001073_080 Hb_011053_010 Hb_011053_010 Hb_000390_090--Hb_011053_010 Hb_000189_540 Hb_000189_540 Hb_000152_210--Hb_000189_540 Hb_007441_170 Hb_007441_170 Hb_000152_210--Hb_007441_170 Hb_000152_210--Hb_015807_160 Hb_000352_200 Hb_000352_200 Hb_000152_210--Hb_000352_200 Hb_000155_090 Hb_000155_090 Hb_000152_210--Hb_000155_090 Hb_009780_050 Hb_009780_050 Hb_000176_010--Hb_009780_050 Hb_001124_180 Hb_001124_180 Hb_000176_010--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000042_290 Hb_000042_290 Hb_000176_010--Hb_000042_290 Hb_002150_130 Hb_002150_130 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_027298_030 Hb_027298_030 Hb_003181_060--Hb_027298_030 Hb_021079_010 Hb_021079_010 Hb_003181_060--Hb_021079_010 Hb_027298_010 Hb_027298_010 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_000392_550 Hb_000392_550 Hb_003181_060--Hb_000392_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.70465 7.28988 56.8064 35.7125 5.8985 5.24103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.8572 73.0802 10.2785 6.25436 38.9804

CAGE analysis