Hb_001450_100

Information

Type -
Description -
Location Contig1450: 127793-128299
Sequence    

Annotation

kegg
ID rcu:RCOM_1743710
description serine/threonine-protein kinase bri1, putative (EC:1.3.1.74)
nr
ID XP_002518383.1
description serine/threonine-protein kinase bri1, putative [Ricinus communis]
swissprot
ID A7PW81
description Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1
trembl
ID B9RXB4
description Serine/threonine-protein kinase bri1, putative OS=Ricinus communis GN=RCOM_1743710 PE=4 SV=1
Gene Ontology
ID GO:0003824
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001450_100 0.0 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
2 Hb_000215_260 0.1879061651 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
3 Hb_001983_010 0.1897740558 - - -
4 Hb_077211_010 0.2065909367 - - PREDICTED: lariat debranching enzyme-like [Jatropha curcas]
5 Hb_012725_100 0.2099481022 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000099_210 0.2324942733 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
7 Hb_088428_010 0.2348987476 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
8 Hb_054885_010 0.2380481094 - - -
9 Hb_000163_280 0.2382053934 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
10 Hb_015026_060 0.2418736743 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
11 Hb_090497_010 0.2419934072 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
12 Hb_000329_420 0.2428259533 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
13 Hb_100964_010 0.244690664 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_010317_030 0.2452666102 - - unknown [Picea sitchensis]
15 Hb_130134_030 0.2460136704 transcription factor TF Family: C3H hypothetical protein JCGZ_14472 [Jatropha curcas]
16 Hb_000101_160 0.2499347049 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
17 Hb_178041_010 0.2505120109 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
18 Hb_011645_030 0.2509493643 - - -
19 Hb_024272_010 0.2515449792 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
20 Hb_023327_030 0.2520703012 - - osmotin-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_001450_100 Hb_001450_100 Hb_000215_260 Hb_000215_260 Hb_001450_100--Hb_000215_260 Hb_001983_010 Hb_001983_010 Hb_001450_100--Hb_001983_010 Hb_077211_010 Hb_077211_010 Hb_001450_100--Hb_077211_010 Hb_012725_100 Hb_012725_100 Hb_001450_100--Hb_012725_100 Hb_000099_210 Hb_000099_210 Hb_001450_100--Hb_000099_210 Hb_088428_010 Hb_088428_010 Hb_001450_100--Hb_088428_010 Hb_000329_420 Hb_000329_420 Hb_000215_260--Hb_000329_420 Hb_023327_030 Hb_023327_030 Hb_000215_260--Hb_023327_030 Hb_000497_230 Hb_000497_230 Hb_000215_260--Hb_000497_230 Hb_004324_240 Hb_004324_240 Hb_000215_260--Hb_004324_240 Hb_063716_010 Hb_063716_010 Hb_000215_260--Hb_063716_010 Hb_015026_060 Hb_015026_060 Hb_000215_260--Hb_015026_060 Hb_001983_010--Hb_012725_100 Hb_010317_030 Hb_010317_030 Hb_001983_010--Hb_010317_030 Hb_011645_030 Hb_011645_030 Hb_001983_010--Hb_011645_030 Hb_024272_010 Hb_024272_010 Hb_001983_010--Hb_024272_010 Hb_001983_010--Hb_077211_010 Hb_130134_030 Hb_130134_030 Hb_077211_010--Hb_130134_030 Hb_183980_010 Hb_183980_010 Hb_077211_010--Hb_183980_010 Hb_007137_060 Hb_007137_060 Hb_077211_010--Hb_007137_060 Hb_006960_030 Hb_006960_030 Hb_077211_010--Hb_006960_030 Hb_003297_020 Hb_003297_020 Hb_077211_010--Hb_003297_020 Hb_001935_190 Hb_001935_190 Hb_077211_010--Hb_001935_190 Hb_012725_100--Hb_024272_010 Hb_090497_010 Hb_090497_010 Hb_012725_100--Hb_090497_010 Hb_013399_080 Hb_013399_080 Hb_012725_100--Hb_013399_080 Hb_012725_100--Hb_010317_030 Hb_007603_010 Hb_007603_010 Hb_000099_210--Hb_007603_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_005976_050 Hb_005976_050 Hb_000099_210--Hb_005976_050 Hb_000031_150 Hb_000031_150 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_007810_100 Hb_007810_100 Hb_000099_210--Hb_007810_100 Hb_121467_010 Hb_121467_010 Hb_088428_010--Hb_121467_010 Hb_142751_010 Hb_142751_010 Hb_088428_010--Hb_142751_010 Hb_178041_010 Hb_178041_010 Hb_088428_010--Hb_178041_010 Hb_088428_010--Hb_130134_030 Hb_009119_030 Hb_009119_030 Hb_088428_010--Hb_009119_030 Hb_000486_060 Hb_000486_060 Hb_088428_010--Hb_000486_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.24779 0.376458 0.707279 3.02331 3.9305 6.57473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.75108 0.727497 0.19328

CAGE analysis