Hb_001452_060

Information

Type -
Description -
Location Contig1452: 83695-88172
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001452_060 0.0 - - -
2 Hb_000948_130 0.1996551306 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004657_080 0.2173538315 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
4 Hb_065500_010 0.2526269624 - - -
5 Hb_048643_010 0.2649288784 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
6 Hb_005288_210 0.2659481958 - - hypothetical protein VITISV_017217 [Vitis vinifera]
7 Hb_000205_230 0.2696047 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
8 Hb_001401_070 0.270420147 - - glycogenin, putative [Ricinus communis]
9 Hb_005217_040 0.2750267092 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
10 Hb_000236_110 0.2801911372 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
11 Hb_000818_080 0.2843419822 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
12 Hb_002420_010 0.2849199194 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
13 Hb_000979_160 0.2855410627 - - hypothetical protein RCOM_0629030 [Ricinus communis]
14 Hb_007802_010 0.2862540016 - - Receptor like protein 6, putative [Theobroma cacao]
15 Hb_002928_120 0.2867979412 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
16 Hb_027556_040 0.2882004347 - - PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera]
17 Hb_007027_010 0.2912534958 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
18 Hb_062479_010 0.2920957837 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
19 Hb_000036_060 0.2928295652 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
20 Hb_019654_110 0.2933414098 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]

Gene co-expression network

sample Hb_001452_060 Hb_001452_060 Hb_000948_130 Hb_000948_130 Hb_001452_060--Hb_000948_130 Hb_004657_080 Hb_004657_080 Hb_001452_060--Hb_004657_080 Hb_065500_010 Hb_065500_010 Hb_001452_060--Hb_065500_010 Hb_048643_010 Hb_048643_010 Hb_001452_060--Hb_048643_010 Hb_005288_210 Hb_005288_210 Hb_001452_060--Hb_005288_210 Hb_000205_230 Hb_000205_230 Hb_001452_060--Hb_000205_230 Hb_020817_030 Hb_020817_030 Hb_000948_130--Hb_020817_030 Hb_037684_010 Hb_037684_010 Hb_000948_130--Hb_037684_010 Hb_002053_170 Hb_002053_170 Hb_000948_130--Hb_002053_170 Hb_000899_060 Hb_000899_060 Hb_000948_130--Hb_000899_060 Hb_000115_290 Hb_000115_290 Hb_000948_130--Hb_000115_290 Hb_078361_010 Hb_078361_010 Hb_004657_080--Hb_078361_010 Hb_001486_060 Hb_001486_060 Hb_004657_080--Hb_001486_060 Hb_000020_030 Hb_000020_030 Hb_004657_080--Hb_000020_030 Hb_000818_080 Hb_000818_080 Hb_004657_080--Hb_000818_080 Hb_001728_130 Hb_001728_130 Hb_004657_080--Hb_001728_130 Hb_116194_010 Hb_116194_010 Hb_004657_080--Hb_116194_010 Hb_005217_040 Hb_005217_040 Hb_065500_010--Hb_005217_040 Hb_011032_010 Hb_011032_010 Hb_065500_010--Hb_011032_010 Hb_013749_060 Hb_013749_060 Hb_065500_010--Hb_013749_060 Hb_053575_020 Hb_053575_020 Hb_065500_010--Hb_053575_020 Hb_111985_040 Hb_111985_040 Hb_065500_010--Hb_111985_040 Hb_001410_010 Hb_001410_010 Hb_065500_010--Hb_001410_010 Hb_000152_460 Hb_000152_460 Hb_048643_010--Hb_000152_460 Hb_004531_110 Hb_004531_110 Hb_048643_010--Hb_004531_110 Hb_048643_010--Hb_000818_080 Hb_000000_110 Hb_000000_110 Hb_048643_010--Hb_000000_110 Hb_002928_120 Hb_002928_120 Hb_048643_010--Hb_002928_120 Hb_000025_400 Hb_000025_400 Hb_048643_010--Hb_000025_400 Hb_000793_040 Hb_000793_040 Hb_005288_210--Hb_000793_040 Hb_000438_020 Hb_000438_020 Hb_005288_210--Hb_000438_020 Hb_002420_010 Hb_002420_010 Hb_005288_210--Hb_002420_010 Hb_002671_060 Hb_002671_060 Hb_005288_210--Hb_002671_060 Hb_003226_030 Hb_003226_030 Hb_005288_210--Hb_003226_030 Hb_002833_020 Hb_002833_020 Hb_005288_210--Hb_002833_020 Hb_003177_090 Hb_003177_090 Hb_000205_230--Hb_003177_090 Hb_049293_010 Hb_049293_010 Hb_000205_230--Hb_049293_010 Hb_001195_250 Hb_001195_250 Hb_000205_230--Hb_001195_250 Hb_001538_020 Hb_001538_020 Hb_000205_230--Hb_001538_020 Hb_002099_060 Hb_002099_060 Hb_000205_230--Hb_002099_060 Hb_000757_020 Hb_000757_020 Hb_000205_230--Hb_000757_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0482672 0.462068 0 0.513952 0.136085 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0883223 0 0.400256 0.337739

CAGE analysis