Hb_001452_090

Information

Type -
Description -
Location Contig1452: 126819-131282
Sequence    

Annotation

kegg
ID vvi:100255855
description serine carboxypeptidase II-3-like
nr
ID XP_002282331.1
description PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
swissprot
ID P52711
description Serine carboxypeptidase II-3 OS=Hordeum vulgare GN=CXP;2-3 PE=2 SV=1
trembl
ID F6H1D7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g11100 PE=4 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001452_090 0.0 - - PREDICTED: serine carboxypeptidase II-3-like [Vitis vinifera]
2 Hb_000101_320 0.0509550466 - - -
3 Hb_000685_140 0.0842105305 - - PREDICTED: uncharacterized protein LOC105645669 [Jatropha curcas]
4 Hb_001411_100 0.1175913461 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
5 Hb_028872_100 0.1246223812 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
6 Hb_000009_390 0.1251563924 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 2 isoform X2 [Jatropha curcas]
7 Hb_008834_010 0.13056873 - - hypothetical protein POPTR_0016s04660g [Populus trichocarpa]
8 Hb_000417_150 0.1393574637 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
9 Hb_000600_080 0.1422264041 - - -
10 Hb_031949_010 0.1444674085 - - -
11 Hb_001514_150 0.1459522726 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
12 Hb_005092_090 0.1495481892 - - cold regulated protein [Manihot esculenta]
13 Hb_004312_020 0.1530384538 - - conserved hypothetical protein [Ricinus communis]
14 Hb_072173_010 0.1534108951 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 34 [Jatropha curcas]
15 Hb_000289_090 0.1548758863 - - -
16 Hb_012796_030 0.1560375617 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_001366_260 0.156211427 - - T4.15 [Malus x robusta]
18 Hb_116784_020 0.1567507004 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
19 Hb_004994_200 0.1574854084 - - PREDICTED: uncharacterized protein LOC105174340 [Sesamum indicum]
20 Hb_006787_070 0.1584678673 - - PREDICTED: uncharacterized protein LOC104121706, partial [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_001452_090 Hb_001452_090 Hb_000101_320 Hb_000101_320 Hb_001452_090--Hb_000101_320 Hb_000685_140 Hb_000685_140 Hb_001452_090--Hb_000685_140 Hb_001411_100 Hb_001411_100 Hb_001452_090--Hb_001411_100 Hb_028872_100 Hb_028872_100 Hb_001452_090--Hb_028872_100 Hb_000009_390 Hb_000009_390 Hb_001452_090--Hb_000009_390 Hb_008834_010 Hb_008834_010 Hb_001452_090--Hb_008834_010 Hb_000101_320--Hb_000685_140 Hb_000101_320--Hb_008834_010 Hb_000101_320--Hb_001411_100 Hb_000101_320--Hb_028872_100 Hb_000101_320--Hb_000009_390 Hb_000685_140--Hb_001411_100 Hb_000685_140--Hb_028872_100 Hb_000600_080 Hb_000600_080 Hb_000685_140--Hb_000600_080 Hb_000685_140--Hb_008834_010 Hb_001411_100--Hb_000600_080 Hb_001411_100--Hb_028872_100 Hb_000417_150 Hb_000417_150 Hb_001411_100--Hb_000417_150 Hb_000767_010 Hb_000767_010 Hb_028872_100--Hb_000767_010 Hb_028872_100--Hb_000417_150 Hb_005306_020 Hb_005306_020 Hb_028872_100--Hb_005306_020 Hb_001866_100 Hb_001866_100 Hb_000009_390--Hb_001866_100 Hb_002818_070 Hb_002818_070 Hb_000009_390--Hb_002818_070 Hb_001856_110 Hb_001856_110 Hb_000009_390--Hb_001856_110 Hb_001836_010 Hb_001836_010 Hb_000009_390--Hb_001836_010 Hb_007035_010 Hb_007035_010 Hb_000009_390--Hb_007035_010 Hb_001514_150 Hb_001514_150 Hb_000009_390--Hb_001514_150 Hb_017225_030 Hb_017225_030 Hb_008834_010--Hb_017225_030 Hb_004312_020 Hb_004312_020 Hb_008834_010--Hb_004312_020 Hb_000260_730 Hb_000260_730 Hb_008834_010--Hb_000260_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0418628 2.86552 0.591239 0.603541 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.02377 6.01365

CAGE analysis