Hb_001454_060

Information

Type -
Description -
Location Contig1454: 50532-53740
Sequence    

Annotation

kegg
ID gmx:100527252
description uncharacterized LOC100527252
nr
ID NP_001237046.1
description uncharacterized protein LOC100527252 [Glycine max]
swissprot
ID O23429
description Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2
trembl
ID I1MGK7
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0016021
description vesicle-associated membrane protein 724

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11731: 50691-51261 , PASA_asmbl_11733: 53047-53515
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_060 0.0 - - uncharacterized protein LOC100527252 [Glycine max]
2 Hb_003494_240 0.0727902941 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
3 Hb_000608_120 0.0760456949 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
4 Hb_000078_130 0.0766654399 - - -
5 Hb_000703_080 0.0786368107 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
6 Hb_000172_400 0.0822325837 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_001817_180 0.0883473269 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
8 Hb_000001_180 0.089262886 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_003581_140 0.0935351552 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]
10 Hb_000413_130 0.0948467816 - - PREDICTED: uncharacterized protein LOC105649409 [Jatropha curcas]
11 Hb_002169_010 0.0964502184 - - PREDICTED: la-related protein 6B [Jatropha curcas]
12 Hb_000703_090 0.09803408 - - PREDICTED: 14-3-3-like protein D [Cucumis sativus]
13 Hb_001431_070 0.0980513092 - - PREDICTED: large proline-rich protein bag6-like isoform X2 [Jatropha curcas]
14 Hb_030312_040 0.0980719623 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
15 Hb_002341_030 0.0990686629 - - PREDICTED: transcription factor bHLH140 [Jatropha curcas]
16 Hb_008725_250 0.0992787168 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_006478_110 0.1014176554 - - type I inositol polyphosphate 5-phosphatase, putative [Ricinus communis]
18 Hb_000358_080 0.1027979013 - - Ribonuclease 3 [Gossypium arboreum]
19 Hb_000490_030 0.1029748426 - - DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
20 Hb_012654_010 0.1030581582 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_060 Hb_001454_060 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180 Hb_003494_240--Hb_000608_120 Hb_000703_090 Hb_000703_090 Hb_003494_240--Hb_000703_090 Hb_002215_050 Hb_002215_050 Hb_003494_240--Hb_002215_050 Hb_030312_040 Hb_030312_040 Hb_003494_240--Hb_030312_040 Hb_003638_140 Hb_003638_140 Hb_003494_240--Hb_003638_140 Hb_003581_140 Hb_003581_140 Hb_000608_120--Hb_003581_140 Hb_000608_120--Hb_002215_050 Hb_000608_120--Hb_003638_140 Hb_000608_120--Hb_000703_080 Hb_000078_130--Hb_003581_140 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000490_030 Hb_000490_030 Hb_000078_130--Hb_000490_030 Hb_000230_330 Hb_000230_330 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_000284_210 Hb_000284_210 Hb_000703_080--Hb_000284_210 Hb_002097_090 Hb_002097_090 Hb_000703_080--Hb_002097_090 Hb_004934_090 Hb_004934_090 Hb_000703_080--Hb_004934_090 Hb_003728_030 Hb_003728_030 Hb_000703_080--Hb_003728_030 Hb_000390_060 Hb_000390_060 Hb_000703_080--Hb_000390_060 Hb_002207_100 Hb_002207_100 Hb_000172_400--Hb_002207_100 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_003638_030 Hb_003638_030 Hb_000172_400--Hb_003638_030 Hb_000138_040 Hb_000138_040 Hb_001817_180--Hb_000138_040 Hb_001057_010 Hb_001057_010 Hb_001817_180--Hb_001057_010 Hb_000358_080 Hb_000358_080 Hb_001817_180--Hb_000358_080 Hb_029281_010 Hb_029281_010 Hb_001817_180--Hb_029281_010 Hb_001817_180--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.8192 44.5295 6.80146 15.7048 95.4433 110.416
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.0861 38.1611 62.5185 23.6385 7.87393

CAGE analysis