Hb_001454_100

Information

Type -
Description -
Location Contig1454: 77981-78340
Sequence    

Annotation

kegg
ID rcu:RCOM_0680920
description RALFL33, putative
nr
ID XP_012083935.1
description PREDICTED: protein RALF-like 33 [Jatropha curcas]
swissprot
ID Q8L9P8
description Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1
trembl
ID A0A067JV88
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18872 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11737: 77924-78565
cDNA
(Sanger)
(ID:Location)		 010_H03.ab1: 77926-78486 , 022_I07.ab1: 77935-78357 , 022_P03.ab1: 77933-78311 , 037_L04.ab1: 77934-78551 , 052_G08.ab1: 77931-78554

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_100 0.0 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
2 Hb_000210_100 0.121108396 - - pepsin A, putative [Ricinus communis]
3 Hb_025466_020 0.1405904674 - - tubulin beta-6 [Brassica oleracea var. italica]
4 Hb_000310_100 0.1554272078 - - conserved hypothetical protein [Ricinus communis]
5 Hb_016564_010 0.1562460618 - - PREDICTED: uncharacterized protein LOC101764501 [Setaria italica]
6 Hb_002154_110 0.1646467861 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_000260_280 0.164815216 - - auxin:hydrogen symporter, putative [Ricinus communis]
8 Hb_111985_110 0.1649851436 - - thioredoxin H-type 3 [Hevea brasiliensis]
9 Hb_025466_010 0.1698761368 - - unnamed protein product [Vitis vinifera]
10 Hb_006903_030 0.1711897418 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
11 Hb_001004_150 0.1730800898 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
12 Hb_000107_510 0.1747336171 - - phosphate transporter [Manihot esculenta]
13 Hb_015675_030 0.1760216281 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
14 Hb_001153_120 0.1783069204 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
15 Hb_000138_170 0.1786244148 - - putative plastid-lipid-associated protein, partial [Hevea brasiliensis]
16 Hb_021409_080 0.1821492818 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
17 Hb_026889_040 0.1838252003 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
18 Hb_029920_020 0.1865258543 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG7 [Jatropha curcas]
19 Hb_000946_100 0.1868288516 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
20 Hb_001754_080 0.1869466544 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_100 Hb_001454_100 Hb_000210_100 Hb_000210_100 Hb_001454_100--Hb_000210_100 Hb_025466_020 Hb_025466_020 Hb_001454_100--Hb_025466_020 Hb_000310_100 Hb_000310_100 Hb_001454_100--Hb_000310_100 Hb_016564_010 Hb_016564_010 Hb_001454_100--Hb_016564_010 Hb_002154_110 Hb_002154_110 Hb_001454_100--Hb_002154_110 Hb_000260_280 Hb_000260_280 Hb_001454_100--Hb_000260_280 Hb_000210_100--Hb_025466_020 Hb_069355_010 Hb_069355_010 Hb_000210_100--Hb_069355_010 Hb_000210_100--Hb_000260_280 Hb_003878_050 Hb_003878_050 Hb_000210_100--Hb_003878_050 Hb_020805_140 Hb_020805_140 Hb_000210_100--Hb_020805_140 Hb_025466_010 Hb_025466_010 Hb_025466_020--Hb_025466_010 Hb_006903_030 Hb_006903_030 Hb_025466_020--Hb_006903_030 Hb_048476_060 Hb_048476_060 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_000310_100--Hb_025466_010 Hb_001153_120 Hb_001153_120 Hb_000310_100--Hb_001153_120 Hb_012244_010 Hb_012244_010 Hb_000310_100--Hb_012244_010 Hb_106552_040 Hb_106552_040 Hb_000310_100--Hb_106552_040 Hb_027073_010 Hb_027073_010 Hb_000310_100--Hb_027073_010 Hb_016564_010--Hb_001153_120 Hb_000389_050 Hb_000389_050 Hb_016564_010--Hb_000389_050 Hb_001004_150 Hb_001004_150 Hb_016564_010--Hb_001004_150 Hb_016564_010--Hb_025466_010 Hb_003097_060 Hb_003097_060 Hb_016564_010--Hb_003097_060 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_008642_030 Hb_008642_030 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_006573_290 Hb_006573_290 Hb_002154_110--Hb_006573_290 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_032972_010 Hb_032972_010 Hb_000260_280--Hb_032972_010 Hb_000260_280--Hb_025466_020 Hb_029920_020 Hb_029920_020 Hb_000260_280--Hb_029920_020 Hb_000260_280--Hb_006903_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.1967 15.3993 59.8322 310.461 12.4795 25.3442
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
106.853 95.7612 180.048 30.1003 103.607

CAGE analysis