Hb_001454_130

Information

Type -
Description -
Location Contig1454: 87125-88507
Sequence    

Annotation

kegg
ID rcu:RCOM_0681050
description Xyloglucan 6-xylosyltransferase, putative (EC:2.4.2.39)
nr
ID XP_002516919.1
description Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
swissprot
ID O22775
description Xyloglucan 6-xylosyltransferase 2 OS=Arabidopsis thaliana GN=XXT2 PE=1 SV=1
trembl
ID B9RT50
description Xyloglucan 6-xylosyltransferase, putative OS=Ricinus communis GN=RCOM_0681050 PE=4 SV=1
Gene Ontology
ID GO:0016021
description xyloglucan 6-xylosyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11739: 86918-88812 , PASA_asmbl_11740: 88298-89588
cDNA
(Sanger)
(ID:Location)		 026_L23.ab1: 86918-87615 , 045_N03.ab1: 86918-87736 , 049_H13.ab1: 88298-89341

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_130 0.0 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
2 Hb_000083_250 0.0715845428 - - ring finger protein, putative [Ricinus communis]
3 Hb_000630_050 0.0715862376 - - conserved hypothetical protein [Ricinus communis]
4 Hb_145314_010 0.0716222764 - - PREDICTED: COP9 signalosome complex subunit 5b-like [Jatropha curcas]
5 Hb_000808_280 0.0778816349 - - conserved hypothetical protein [Ricinus communis]
6 Hb_106724_020 0.0793571202 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
7 Hb_150986_010 0.0810423443 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000205_300 0.0832940619 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
9 Hb_002445_120 0.08645673 - - secretory carrier membrane protein, putative [Ricinus communis]
10 Hb_000365_390 0.0869287848 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
11 Hb_000146_050 0.0873133367 - - PREDICTED: protein unc-50 homolog isoform X2 [Gossypium raimondii]
12 Hb_005170_040 0.0895047226 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
13 Hb_000120_060 0.0897886517 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1 [Populus euphratica]
14 Hb_000347_180 0.0898854274 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
15 Hb_007904_200 0.0908723906 - - protein binding protein, putative [Ricinus communis]
16 Hb_000618_040 0.0919505179 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
17 Hb_001018_130 0.091964681 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
18 Hb_003777_310 0.0922656462 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001377_270 0.0926458817 - - hypothetical protein CICLE_v10021159mg [Citrus clementina]
20 Hb_002716_130 0.0926521427 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_130 Hb_001454_130 Hb_000083_250 Hb_000083_250 Hb_001454_130--Hb_000083_250 Hb_000630_050 Hb_000630_050 Hb_001454_130--Hb_000630_050 Hb_145314_010 Hb_145314_010 Hb_001454_130--Hb_145314_010 Hb_000808_280 Hb_000808_280 Hb_001454_130--Hb_000808_280 Hb_106724_020 Hb_106724_020 Hb_001454_130--Hb_106724_020 Hb_150986_010 Hb_150986_010 Hb_001454_130--Hb_150986_010 Hb_000083_250--Hb_000808_280 Hb_000083_250--Hb_000630_050 Hb_007904_160 Hb_007904_160 Hb_000083_250--Hb_007904_160 Hb_000146_050 Hb_000146_050 Hb_000083_250--Hb_000146_050 Hb_001018_130 Hb_001018_130 Hb_000083_250--Hb_001018_130 Hb_000630_050--Hb_000808_280 Hb_000630_050--Hb_106724_020 Hb_000085_160 Hb_000085_160 Hb_000630_050--Hb_000085_160 Hb_006827_020 Hb_006827_020 Hb_000630_050--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_000630_050--Hb_007317_110 Hb_000011_200 Hb_000011_200 Hb_000630_050--Hb_000011_200 Hb_000205_300 Hb_000205_300 Hb_145314_010--Hb_000205_300 Hb_011671_240 Hb_011671_240 Hb_145314_010--Hb_011671_240 Hb_145314_010--Hb_106724_020 Hb_000120_060 Hb_000120_060 Hb_145314_010--Hb_000120_060 Hb_003693_070 Hb_003693_070 Hb_145314_010--Hb_003693_070 Hb_000808_280--Hb_000085_160 Hb_000808_280--Hb_003693_070 Hb_000808_280--Hb_000120_060 Hb_000120_670 Hb_000120_670 Hb_000808_280--Hb_000120_670 Hb_003813_130 Hb_003813_130 Hb_106724_020--Hb_003813_130 Hb_004055_030 Hb_004055_030 Hb_106724_020--Hb_004055_030 Hb_001102_140 Hb_001102_140 Hb_106724_020--Hb_001102_140 Hb_106724_020--Hb_000808_280 Hb_011930_160 Hb_011930_160 Hb_150986_010--Hb_011930_160 Hb_000300_050 Hb_000300_050 Hb_150986_010--Hb_000300_050 Hb_000789_310 Hb_000789_310 Hb_150986_010--Hb_000789_310 Hb_150986_010--Hb_000120_060 Hb_103012_010 Hb_103012_010 Hb_150986_010--Hb_103012_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.425 37.0128 28.3337 70.8637 58.9688 79.2703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.5957 36.0064 66.8713 38.8963 33.1967

CAGE analysis