Hb_001454_150

Information

Type -
Description -
Location Contig1454: 99193-109918
Sequence    

Annotation

kegg
ID rcu:RCOM_0681070
description isoleucyl tRNA synthetase, putative (EC:6.1.1.5)
nr
ID XP_002516921.1
description isoleucyl tRNA synthetase, putative [Ricinus communis]
swissprot
ID Q8YXY3
description Isoleucine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ileS PE=3 SV=1
trembl
ID B9RT52
description Isoleucyl tRNA synthetase, putative OS=Ricinus communis GN=RCOM_0681070 PE=3 SV=1
Gene Ontology
ID GO:0009570
description probable isoleucine--trna mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11744: 99270-103395 , PASA_asmbl_11745: 103663-104050 , PASA_asmbl_11746: 104368-108452 , PASA_asmbl_11747: 108458-109855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_150 0.0 - - isoleucyl tRNA synthetase, putative [Ricinus communis]
2 Hb_000194_010 0.0897770333 - - omega-6 fatty acid desaturase, chloroplastic [Jatropha curcas]
3 Hb_001789_160 0.0971200358 - - PREDICTED: putative transporter arsB [Jatropha curcas]
4 Hb_005016_140 0.1014766142 - - PREDICTED: thylakoid lumenal 15.0 kDa protein 2, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_031042_060 0.1016646324 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000260_710 0.1098797917 - - PREDICTED: uncharacterized protein LOC105649017 isoform X1 [Jatropha curcas]
7 Hb_004871_010 0.1100746327 - - RNA polymerase sigma factor rpoD1, putative [Ricinus communis]
8 Hb_000061_150 0.1134090821 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
9 Hb_021650_010 0.1154399349 - - hypothetical protein JCGZ_09648 [Jatropha curcas]
10 Hb_000613_120 0.1232151581 transcription factor TF Family: SET PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
11 Hb_000181_060 0.1246737476 - - PREDICTED: 30S ribosomal protein S20, chloroplastic [Jatropha curcas]
12 Hb_000802_130 0.1276309386 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
13 Hb_011861_050 0.1289887748 - - PREDICTED: COBW domain-containing protein 1 [Jatropha curcas]
14 Hb_001959_240 0.1293553355 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_006787_090 0.1298089675 - - PREDICTED: uncharacterized protein LOC105646282 [Jatropha curcas]
16 Hb_000094_100 0.13105142 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
17 Hb_000976_190 0.131497347 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
18 Hb_000320_190 0.1324797704 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_000284_130 0.1329944058 - - sodium-bile acid cotransporter, putative [Ricinus communis]
20 Hb_002044_020 0.1349623419 - - glucose-1-phosphate denylyltransferase small subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_001454_150 Hb_001454_150 Hb_000194_010 Hb_000194_010 Hb_001454_150--Hb_000194_010 Hb_001789_160 Hb_001789_160 Hb_001454_150--Hb_001789_160 Hb_005016_140 Hb_005016_140 Hb_001454_150--Hb_005016_140 Hb_031042_060 Hb_031042_060 Hb_001454_150--Hb_031042_060 Hb_000260_710 Hb_000260_710 Hb_001454_150--Hb_000260_710 Hb_004871_010 Hb_004871_010 Hb_001454_150--Hb_004871_010 Hb_000061_150 Hb_000061_150 Hb_000194_010--Hb_000061_150 Hb_000181_060 Hb_000181_060 Hb_000194_010--Hb_000181_060 Hb_000976_190 Hb_000976_190 Hb_000194_010--Hb_000976_190 Hb_011310_140 Hb_011310_140 Hb_000194_010--Hb_011310_140 Hb_012653_030 Hb_012653_030 Hb_000194_010--Hb_012653_030 Hb_003071_030 Hb_003071_030 Hb_001789_160--Hb_003071_030 Hb_000094_100 Hb_000094_100 Hb_001789_160--Hb_000094_100 Hb_001789_160--Hb_031042_060 Hb_000302_190 Hb_000302_190 Hb_001789_160--Hb_000302_190 Hb_000613_120 Hb_000613_120 Hb_001789_160--Hb_000613_120 Hb_001789_160--Hb_000260_710 Hb_005016_140--Hb_004871_010 Hb_005016_140--Hb_000976_190 Hb_005016_140--Hb_000194_010 Hb_005016_140--Hb_000061_150 Hb_005016_140--Hb_011310_140 Hb_031042_060--Hb_000260_710 Hb_004884_180 Hb_004884_180 Hb_031042_060--Hb_004884_180 Hb_000363_060 Hb_000363_060 Hb_031042_060--Hb_000363_060 Hb_010174_090 Hb_010174_090 Hb_031042_060--Hb_010174_090 Hb_021650_010 Hb_021650_010 Hb_031042_060--Hb_021650_010 Hb_000260_710--Hb_004871_010 Hb_003462_060 Hb_003462_060 Hb_000260_710--Hb_003462_060 Hb_001472_160 Hb_001472_160 Hb_000260_710--Hb_001472_160 Hb_011861_050 Hb_011861_050 Hb_000260_710--Hb_011861_050 Hb_003376_390 Hb_003376_390 Hb_004871_010--Hb_003376_390 Hb_004871_010--Hb_000976_190 Hb_006787_090 Hb_006787_090 Hb_004871_010--Hb_006787_090 Hb_002928_030 Hb_002928_030 Hb_004871_010--Hb_002928_030 Hb_001959_060 Hb_001959_060 Hb_004871_010--Hb_001959_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.53837 5.07478 25.8155 6.05778 5.31598 10.4598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72431 3.54983 4.31446 5.08102 21.6126

CAGE analysis