Hb_001454_160

Information

Type -
Description -
Location Contig1454: 110813-115075
Sequence    

Annotation

kegg
ID rcu:RCOM_0681080
description GTP binding protein, putative
nr
ID XP_012083941.1
description PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
swissprot
ID O81283
description Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1
trembl
ID A0A067JV91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18877 PE=4 SV=1
Gene Ontology
ID GO:0005525
description translocase of chloroplast chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11748: 110942-111049 , PASA_asmbl_11750: 113897-114511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_160 0.0 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
2 Hb_002555_020 0.0788915379 - - Receptor-like protein kinase [Medicago truncatula]
3 Hb_018563_040 0.1014079339 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
4 Hb_000976_060 0.1080615444 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
5 Hb_005542_110 0.1115415167 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
6 Hb_152718_010 0.1287570288 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
7 Hb_001489_030 0.1326840501 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
8 Hb_000221_170 0.1356015113 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
9 Hb_118777_010 0.135806733 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
10 Hb_005333_100 0.1363579206 - - conserved hypothetical protein [Ricinus communis]
11 Hb_169388_010 0.1386580016 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
12 Hb_005489_160 0.1387375456 - - PREDICTED: primary amine oxidase-like [Jatropha curcas]
13 Hb_004195_190 0.1419167607 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_004055_100 0.1431297474 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
15 Hb_011174_100 0.1440643868 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_007666_040 0.1442015279 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
17 Hb_000876_050 0.1477234965 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like [Jatropha curcas]
18 Hb_003117_060 0.1497704895 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
19 Hb_011214_140 0.1512617061 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_004619_010 0.1516738201 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_160 Hb_001454_160 Hb_002555_020 Hb_002555_020 Hb_001454_160--Hb_002555_020 Hb_018563_040 Hb_018563_040 Hb_001454_160--Hb_018563_040 Hb_000976_060 Hb_000976_060 Hb_001454_160--Hb_000976_060 Hb_005542_110 Hb_005542_110 Hb_001454_160--Hb_005542_110 Hb_152718_010 Hb_152718_010 Hb_001454_160--Hb_152718_010 Hb_001489_030 Hb_001489_030 Hb_001454_160--Hb_001489_030 Hb_002555_020--Hb_018563_040 Hb_004195_190 Hb_004195_190 Hb_002555_020--Hb_004195_190 Hb_002555_020--Hb_000976_060 Hb_002555_020--Hb_001489_030 Hb_002555_020--Hb_005542_110 Hb_169388_010 Hb_169388_010 Hb_018563_040--Hb_169388_010 Hb_151364_010 Hb_151364_010 Hb_018563_040--Hb_151364_010 Hb_003385_090 Hb_003385_090 Hb_018563_040--Hb_003385_090 Hb_003117_060 Hb_003117_060 Hb_018563_040--Hb_003117_060 Hb_005333_100 Hb_005333_100 Hb_000976_060--Hb_005333_100 Hb_000976_060--Hb_152718_010 Hb_000976_060--Hb_005542_110 Hb_001838_010 Hb_001838_010 Hb_000976_060--Hb_001838_010 Hb_001623_470 Hb_001623_470 Hb_000976_060--Hb_001623_470 Hb_004055_100 Hb_004055_100 Hb_005542_110--Hb_004055_100 Hb_000684_010 Hb_000684_010 Hb_005542_110--Hb_000684_010 Hb_011174_100 Hb_011174_100 Hb_005542_110--Hb_011174_100 Hb_005542_110--Hb_005333_100 Hb_000876_050 Hb_000876_050 Hb_005542_110--Hb_000876_050 Hb_118777_010 Hb_118777_010 Hb_152718_010--Hb_118777_010 Hb_152718_010--Hb_005333_100 Hb_000489_020 Hb_000489_020 Hb_152718_010--Hb_000489_020 Hb_000265_020 Hb_000265_020 Hb_152718_010--Hb_000265_020 Hb_001769_030 Hb_001769_030 Hb_152718_010--Hb_001769_030 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_008503_020 Hb_008503_020 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_002917_030 Hb_002917_030 Hb_001489_030--Hb_002917_030 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_012053_030 Hb_012053_030 Hb_001489_030--Hb_012053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0132559 13.2759 0.532025 0.5843 0.0168241 0.0234521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0800585 0.118133 0.0908357 9.23335 1.90897

CAGE analysis