Hb_001454_170

Information

Type -
Description -
Location Contig1454: 117075-120125
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22160g
description wound-responsive family protein
nr
ID XP_012083942.1
description PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18878 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11753: 118537-118976 , PASA_asmbl_11755: 118998-119638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_170 0.0 - - PREDICTED: uncharacterized protein LOC105643431 [Jatropha curcas]
2 Hb_000949_020 0.0697892975 transcription factor TF Family: Orphans PREDICTED: ethylene receptor isoform X2 [Jatropha curcas]
3 Hb_001673_050 0.0770726674 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8-like isoform X1 [Jatropha curcas]
4 Hb_000334_130 0.0805986736 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
5 Hb_134362_010 0.0806235627 - - PREDICTED: FAS-associated factor 2 [Jatropha curcas]
6 Hb_009486_080 0.082302081 - - PREDICTED: uncharacterized protein LOC105643242 [Jatropha curcas]
7 Hb_000573_060 0.0864070827 - - PREDICTED: eukaryotic translation initiation factor 2D isoform X1 [Jatropha curcas]
8 Hb_002641_130 0.0868909764 - - PREDICTED: uncharacterized protein LOC105643556 [Jatropha curcas]
9 Hb_000352_070 0.0873839416 - - Potassium transporter, putative [Ricinus communis]
10 Hb_002027_280 0.0887369489 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
11 Hb_001277_300 0.0903492499 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
12 Hb_007818_030 0.0917526827 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
13 Hb_000243_130 0.0918543393 - - hypothetical protein M569_10795, partial [Genlisea aurea]
14 Hb_004032_230 0.0924091011 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
15 Hb_004429_010 0.0927844382 - - calcineurin-like phosphoesterase [Manihot esculenta]
16 Hb_000176_100 0.0936448754 - - PREDICTED: probable splicing factor 3A subunit 1 [Solanum lycopersicum]
17 Hb_002284_170 0.0946365016 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
18 Hb_000086_150 0.0953630165 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
19 Hb_003124_160 0.0981938218 - - dynamin, putative [Ricinus communis]
20 Hb_001221_090 0.1003508161 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_170 Hb_001454_170 Hb_000949_020 Hb_000949_020 Hb_001454_170--Hb_000949_020 Hb_001673_050 Hb_001673_050 Hb_001454_170--Hb_001673_050 Hb_000334_130 Hb_000334_130 Hb_001454_170--Hb_000334_130 Hb_134362_010 Hb_134362_010 Hb_001454_170--Hb_134362_010 Hb_009486_080 Hb_009486_080 Hb_001454_170--Hb_009486_080 Hb_000573_060 Hb_000573_060 Hb_001454_170--Hb_000573_060 Hb_000120_910 Hb_000120_910 Hb_000949_020--Hb_000120_910 Hb_000949_020--Hb_001673_050 Hb_004429_010 Hb_004429_010 Hb_000949_020--Hb_004429_010 Hb_002284_170 Hb_002284_170 Hb_000949_020--Hb_002284_170 Hb_004129_070 Hb_004129_070 Hb_000949_020--Hb_004129_070 Hb_004517_020 Hb_004517_020 Hb_000949_020--Hb_004517_020 Hb_002849_170 Hb_002849_170 Hb_001673_050--Hb_002849_170 Hb_000099_040 Hb_000099_040 Hb_001673_050--Hb_000099_040 Hb_001668_010 Hb_001668_010 Hb_001673_050--Hb_001668_010 Hb_004976_010 Hb_004976_010 Hb_001673_050--Hb_004976_010 Hb_007426_060 Hb_007426_060 Hb_001673_050--Hb_007426_060 Hb_001673_050--Hb_004429_010 Hb_001221_090 Hb_001221_090 Hb_000334_130--Hb_001221_090 Hb_002092_070 Hb_002092_070 Hb_000334_130--Hb_002092_070 Hb_002027_280 Hb_002027_280 Hb_000334_130--Hb_002027_280 Hb_000334_130--Hb_004429_010 Hb_000352_070 Hb_000352_070 Hb_000334_130--Hb_000352_070 Hb_009252_050 Hb_009252_050 Hb_134362_010--Hb_009252_050 Hb_134362_010--Hb_001668_010 Hb_134362_010--Hb_001673_050 Hb_134362_010--Hb_002849_170 Hb_134362_010--Hb_000352_070 Hb_134362_010--Hb_004429_010 Hb_000086_150 Hb_000086_150 Hb_009486_080--Hb_000086_150 Hb_002641_130 Hb_002641_130 Hb_009486_080--Hb_002641_130 Hb_009486_080--Hb_000573_060 Hb_002014_040 Hb_002014_040 Hb_009486_080--Hb_002014_040 Hb_000260_560 Hb_000260_560 Hb_009486_080--Hb_000260_560 Hb_000573_060--Hb_002641_130 Hb_001244_150 Hb_001244_150 Hb_000573_060--Hb_001244_150 Hb_000573_060--Hb_000086_150 Hb_000573_060--Hb_000260_560 Hb_001001_150 Hb_001001_150 Hb_000573_060--Hb_001001_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.5897 13.2122 8.37938 8.08769 12.8847 5.85988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.39002 3.95085 4.86788 7.10421 8.44105

CAGE analysis