Hb_001454_180

Information

Type -
Description -
Location Contig1454: 120238-121857
Sequence    

Annotation

kegg
ID rcu:RCOM_0681200
description clasp, putative
nr
ID XP_012083943.1
description PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
swissprot
ID Q6A070
description Protein FAM179B OS=Mus musculus GN=Fam179b PE=3 SV=3
trembl
ID A0A067K7L4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18879 PE=4 SV=1
Gene Ontology
ID GO:0000911
description protein fam179b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11758: 120188-121702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_180 0.0 - - PREDICTED: uncharacterized protein LOC105643432 [Jatropha curcas]
2 Hb_004963_020 0.0845194824 - - PREDICTED: patellin-4 [Populus euphratica]
3 Hb_010021_060 0.0941481857 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
4 Hb_000441_210 0.094639493 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
5 Hb_000028_530 0.1011258258 - - Protein regulator of cytokinesis, putative [Ricinus communis]
6 Hb_007558_110 0.1044580934 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
7 Hb_002473_030 0.1081303199 - - PREDICTED: osmotic avoidance abnormal protein 3 [Jatropha curcas]
8 Hb_002837_030 0.1086040824 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001864_040 0.1090984345 - - PREDICTED: kinesin-1 [Jatropha curcas]
10 Hb_004032_390 0.1168699456 - - CDK, putative [Ricinus communis]
11 Hb_005649_050 0.1207415312 - - conserved hypothetical protein [Ricinus communis]
12 Hb_162378_020 0.1215352514 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
13 Hb_000265_100 0.1225057921 - - PREDICTED: uncharacterized protein LOC105643473 [Jatropha curcas]
14 Hb_000316_070 0.1228569787 - - PREDICTED: actin-1-like isoform X2 [Cucumis melo]
15 Hb_000334_120 0.1240102966 - - PREDICTED: DNA topoisomerase 2 [Jatropha curcas]
16 Hb_004635_020 0.1241952593 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
17 Hb_002686_070 0.1256843139 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000189_350 0.1263081083 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 3 [Jatropha curcas]
19 Hb_001699_070 0.1266391584 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001210_030 0.1267626129 - - PREDICTED: plectin [Jatropha curcas]

Gene co-expression network

sample Hb_001454_180 Hb_001454_180 Hb_004963_020 Hb_004963_020 Hb_001454_180--Hb_004963_020 Hb_010021_060 Hb_010021_060 Hb_001454_180--Hb_010021_060 Hb_000441_210 Hb_000441_210 Hb_001454_180--Hb_000441_210 Hb_000028_530 Hb_000028_530 Hb_001454_180--Hb_000028_530 Hb_007558_110 Hb_007558_110 Hb_001454_180--Hb_007558_110 Hb_002473_030 Hb_002473_030 Hb_001454_180--Hb_002473_030 Hb_004963_020--Hb_002473_030 Hb_000316_070 Hb_000316_070 Hb_004963_020--Hb_000316_070 Hb_001168_030 Hb_001168_030 Hb_004963_020--Hb_001168_030 Hb_001864_040 Hb_001864_040 Hb_004963_020--Hb_001864_040 Hb_002837_030 Hb_002837_030 Hb_004963_020--Hb_002837_030 Hb_005649_050 Hb_005649_050 Hb_004963_020--Hb_005649_050 Hb_010021_060--Hb_002837_030 Hb_162378_020 Hb_162378_020 Hb_010021_060--Hb_162378_020 Hb_011063_030 Hb_011063_030 Hb_010021_060--Hb_011063_030 Hb_002686_070 Hb_002686_070 Hb_010021_060--Hb_002686_070 Hb_007044_260 Hb_007044_260 Hb_010021_060--Hb_007044_260 Hb_000441_210--Hb_004963_020 Hb_004102_090 Hb_004102_090 Hb_000441_210--Hb_004102_090 Hb_010705_040 Hb_010705_040 Hb_000441_210--Hb_010705_040 Hb_002205_180 Hb_002205_180 Hb_000441_210--Hb_002205_180 Hb_000441_210--Hb_001168_030 Hb_000334_120 Hb_000334_120 Hb_000028_530--Hb_000334_120 Hb_000265_100 Hb_000265_100 Hb_000028_530--Hb_000265_100 Hb_002374_090 Hb_002374_090 Hb_000028_530--Hb_002374_090 Hb_000189_350 Hb_000189_350 Hb_000028_530--Hb_000189_350 Hb_033041_010 Hb_033041_010 Hb_000028_530--Hb_033041_010 Hb_000028_530--Hb_004963_020 Hb_007558_110--Hb_001864_040 Hb_000035_190 Hb_000035_190 Hb_007558_110--Hb_000035_190 Hb_007558_110--Hb_162378_020 Hb_007558_110--Hb_004963_020 Hb_007558_110--Hb_011063_030 Hb_002473_030--Hb_005649_050 Hb_004032_390 Hb_004032_390 Hb_002473_030--Hb_004032_390 Hb_001220_020 Hb_001220_020 Hb_002473_030--Hb_001220_020 Hb_002473_030--Hb_002837_030 Hb_003398_050 Hb_003398_050 Hb_002473_030--Hb_003398_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.626357 0.857822 52.8109 14.6124 0.908553 0.188573
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.637357 0.192805 0.355495 3.70385 0.948413

CAGE analysis