Hb_001454_190

Information

Type -
Description -
Location Contig1454: 124188-127691
Sequence    

Annotation

kegg
ID rcu:RCOM_0681210
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083944.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
swissprot
ID Q9M907
description Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
trembl
ID B9RT56
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0681210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11762: 126724-127337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_190 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g06920 [Jatropha curcas]
2 Hb_172932_010 0.0580218058 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_012325_020 0.0668963114 - - PREDICTED: ATPase family AAA domain-containing protein At1g05910 isoform X1 [Jatropha curcas]
4 Hb_016901_010 0.0681621305 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
5 Hb_000617_150 0.0693149216 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61360-like [Jatropha curcas]
6 Hb_000002_050 0.073101469 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
7 Hb_011534_030 0.0771752832 - - hypothetical protein POPTR_0008s08530g [Populus trichocarpa]
8 Hb_001699_130 0.0876909509 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
9 Hb_086639_030 0.091580666 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000696_040 0.0924999702 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_008695_100 0.0932854647 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X2 [Jatropha curcas]
12 Hb_011030_020 0.0941252591 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
13 Hb_001318_270 0.0950601848 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
14 Hb_001959_190 0.0969636304 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase family member SUVH9-like [Jatropha curcas]
15 Hb_000805_020 0.0971867912 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
16 Hb_001726_020 0.0980951795 - - PREDICTED: endophilin-A1 [Jatropha curcas]
17 Hb_000340_390 0.0990744608 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
18 Hb_007747_200 0.0991214998 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]
19 Hb_003053_020 0.0991514059 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_004607_030 0.0997208705 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001454_190 Hb_001454_190 Hb_172932_010 Hb_172932_010 Hb_001454_190--Hb_172932_010 Hb_012325_020 Hb_012325_020 Hb_001454_190--Hb_012325_020 Hb_016901_010 Hb_016901_010 Hb_001454_190--Hb_016901_010 Hb_000617_150 Hb_000617_150 Hb_001454_190--Hb_000617_150 Hb_000002_050 Hb_000002_050 Hb_001454_190--Hb_000002_050 Hb_011534_030 Hb_011534_030 Hb_001454_190--Hb_011534_030 Hb_172932_010--Hb_011534_030 Hb_172932_010--Hb_000617_150 Hb_009113_070 Hb_009113_070 Hb_172932_010--Hb_009113_070 Hb_086639_030 Hb_086639_030 Hb_172932_010--Hb_086639_030 Hb_002235_280 Hb_002235_280 Hb_172932_010--Hb_002235_280 Hb_001318_270 Hb_001318_270 Hb_012325_020--Hb_001318_270 Hb_000445_040 Hb_000445_040 Hb_012325_020--Hb_000445_040 Hb_003976_030 Hb_003976_030 Hb_012325_020--Hb_003976_030 Hb_001726_020 Hb_001726_020 Hb_012325_020--Hb_001726_020 Hb_001959_190 Hb_001959_190 Hb_012325_020--Hb_001959_190 Hb_000696_040 Hb_000696_040 Hb_016901_010--Hb_000696_040 Hb_010172_050 Hb_010172_050 Hb_016901_010--Hb_010172_050 Hb_085863_030 Hb_085863_030 Hb_016901_010--Hb_085863_030 Hb_000723_080 Hb_000723_080 Hb_016901_010--Hb_000723_080 Hb_000343_130 Hb_000343_130 Hb_016901_010--Hb_000343_130 Hb_000120_680 Hb_000120_680 Hb_000617_150--Hb_000120_680 Hb_001699_130 Hb_001699_130 Hb_000617_150--Hb_001699_130 Hb_000617_150--Hb_011534_030 Hb_008695_100 Hb_008695_100 Hb_000617_150--Hb_008695_100 Hb_004846_070 Hb_004846_070 Hb_000002_050--Hb_004846_070 Hb_007747_200 Hb_007747_200 Hb_000002_050--Hb_007747_200 Hb_000002_050--Hb_016901_010 Hb_000019_130 Hb_000019_130 Hb_000002_050--Hb_000019_130 Hb_001373_180 Hb_001373_180 Hb_000002_050--Hb_001373_180 Hb_003053_020 Hb_003053_020 Hb_011534_030--Hb_003053_020 Hb_019263_020 Hb_019263_020 Hb_011534_030--Hb_019263_020 Hb_011534_030--Hb_009113_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5202 2.21283 1.28136 1.34937 2.65113 3.42668
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.44606 4.96475 7.83187 3.43198 2.40699

CAGE analysis