Hb_001454_200

Information

Type transcription factor
Description TF Family: TRAF
Location Contig1454: 127737-134998
Sequence    

Annotation

kegg
ID rcu:RCOM_0681220
description hypothetical protein
nr
ID XP_012083945.1
description PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
swissprot
ID Q920G9
description Germ cell-less protein-like 1 OS=Mus musculus GN=Gmcl1 PE=1 SV=2
trembl
ID B9RT57
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0681220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_200 0.0 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
2 Hb_002495_080 0.0942450413 - - PREDICTED: polygalacturonase ADPG2 [Jatropha curcas]
3 Hb_002217_250 0.0986645612 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006658_020 0.10430513 - - PREDICTED: uncharacterized protein LOC105633529 [Jatropha curcas]
5 Hb_000347_250 0.1051959209 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
6 Hb_023313_030 0.1100073955 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002820_020 0.1143248464 - - hypothetical protein VITISV_005587 [Vitis vinifera]
8 Hb_010515_020 0.1147621114 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
9 Hb_001951_150 0.1159797219 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
10 Hb_002849_130 0.1170581785 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
11 Hb_001617_040 0.1170722892 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_023371_020 0.1172267892 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
13 Hb_000212_230 0.1191241729 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
14 Hb_003517_040 0.1198883423 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
15 Hb_000347_430 0.1205956156 - - PREDICTED: mitochondrial ubiquitin ligase activator of nfkb 1-A [Jatropha curcas]
16 Hb_011063_050 0.1206260877 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
17 Hb_001589_010 0.1213116262 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
18 Hb_001016_050 0.1213614855 - - drought-inducible protein [Manihot esculenta]
19 Hb_000258_070 0.1216627317 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
20 Hb_005588_080 0.1217937565 - - PREDICTED: uncharacterized protein LOC105633661 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_200 Hb_001454_200 Hb_002495_080 Hb_002495_080 Hb_001454_200--Hb_002495_080 Hb_002217_250 Hb_002217_250 Hb_001454_200--Hb_002217_250 Hb_006658_020 Hb_006658_020 Hb_001454_200--Hb_006658_020 Hb_000347_250 Hb_000347_250 Hb_001454_200--Hb_000347_250 Hb_023313_030 Hb_023313_030 Hb_001454_200--Hb_023313_030 Hb_002820_020 Hb_002820_020 Hb_001454_200--Hb_002820_020 Hb_005650_010 Hb_005650_010 Hb_002495_080--Hb_005650_010 Hb_002495_080--Hb_006658_020 Hb_000340_230 Hb_000340_230 Hb_002495_080--Hb_000340_230 Hb_000441_090 Hb_000441_090 Hb_002495_080--Hb_000441_090 Hb_000258_070 Hb_000258_070 Hb_002495_080--Hb_000258_070 Hb_000049_020 Hb_000049_020 Hb_002495_080--Hb_000049_020 Hb_007645_100 Hb_007645_100 Hb_002217_250--Hb_007645_100 Hb_002263_020 Hb_002263_020 Hb_002217_250--Hb_002263_020 Hb_000347_430 Hb_000347_430 Hb_002217_250--Hb_000347_430 Hb_003517_040 Hb_003517_040 Hb_002217_250--Hb_003517_040 Hb_002732_040 Hb_002732_040 Hb_002217_250--Hb_002732_040 Hb_000340_530 Hb_000340_530 Hb_002217_250--Hb_000340_530 Hb_001016_050 Hb_001016_050 Hb_006658_020--Hb_001016_050 Hb_004452_110 Hb_004452_110 Hb_006658_020--Hb_004452_110 Hb_002046_160 Hb_002046_160 Hb_006658_020--Hb_002046_160 Hb_006658_020--Hb_000258_070 Hb_132840_110 Hb_132840_110 Hb_006658_020--Hb_132840_110 Hb_000292_100 Hb_000292_100 Hb_000347_250--Hb_000292_100 Hb_007472_070 Hb_007472_070 Hb_000347_250--Hb_007472_070 Hb_062226_130 Hb_062226_130 Hb_000347_250--Hb_062226_130 Hb_012022_040 Hb_012022_040 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_001259_050 Hb_001259_050 Hb_000347_250--Hb_001259_050 Hb_002728_080 Hb_002728_080 Hb_023313_030--Hb_002728_080 Hb_005797_010 Hb_005797_010 Hb_023313_030--Hb_005797_010 Hb_000215_300 Hb_000215_300 Hb_023313_030--Hb_000215_300 Hb_000313_220 Hb_000313_220 Hb_023313_030--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_023313_030--Hb_000976_140 Hb_023313_030--Hb_002849_130 Hb_005800_030 Hb_005800_030 Hb_002820_020--Hb_005800_030 Hb_000179_270 Hb_000179_270 Hb_002820_020--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002820_020--Hb_000087_070 Hb_000347_240 Hb_000347_240 Hb_002820_020--Hb_000347_240 Hb_185255_010 Hb_185255_010 Hb_002820_020--Hb_185255_010 Hb_001189_070 Hb_001189_070 Hb_002820_020--Hb_001189_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.919033 0.847066 0.611437 1.22351 0.87416 0.334437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.912338 0.704866 0.622829 0.730561 1.25016

CAGE analysis