Hb_001454_210

Information

Type -
Description -
Location Contig1454: 136781-138703
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19800g
description hypothetical protein
nr
ID XP_012083946.1
description PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
swissprot
ID Q9FFJ8
description L10-interacting MYB domain-containing protein OS=Arabidopsis thaliana GN=LIMYB PE=1 SV=1
trembl
ID A0A067JV95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18882 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11763: 137395-138510
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_210 0.0 - - PREDICTED: uncharacterized protein LOC105643435 [Jatropha curcas]
2 Hb_015306_020 0.0479453949 transcription factor TF Family: MYB-related PREDICTED: dnaJ homolog subfamily C member 2 [Jatropha curcas]
3 Hb_028872_140 0.0493934005 - - PREDICTED: uncharacterized protein LOC105644767 isoform X1 [Jatropha curcas]
4 Hb_005062_070 0.0571338148 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
5 Hb_009111_050 0.0584940285 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
6 Hb_002811_360 0.0607370026 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
7 Hb_001030_120 0.0620107545 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
8 Hb_000190_140 0.0633071478 transcription factor TF Family: TRAF PREDICTED: ETO1-like protein 1 [Jatropha curcas]
9 Hb_000120_950 0.0664892826 - - PREDICTED: protein GRIP [Jatropha curcas]
10 Hb_004724_200 0.0694107542 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
11 Hb_039837_010 0.0701818763 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
12 Hb_006332_020 0.0705695939 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
13 Hb_015001_020 0.0706476706 - - PREDICTED: la-related protein 6B [Jatropha curcas]
14 Hb_004195_160 0.0707001194 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
15 Hb_007951_050 0.0710618888 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000032_570 0.0743799407 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
17 Hb_000030_010 0.0745024913 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
18 Hb_000754_060 0.0773663014 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
19 Hb_000398_180 0.0775040412 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
20 Hb_000421_260 0.0778499418 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001454_210 Hb_001454_210 Hb_015306_020 Hb_015306_020 Hb_001454_210--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_001454_210--Hb_028872_140 Hb_005062_070 Hb_005062_070 Hb_001454_210--Hb_005062_070 Hb_009111_050 Hb_009111_050 Hb_001454_210--Hb_009111_050 Hb_002811_360 Hb_002811_360 Hb_001454_210--Hb_002811_360 Hb_001030_120 Hb_001030_120 Hb_001454_210--Hb_001030_120 Hb_002890_340 Hb_002890_340 Hb_015306_020--Hb_002890_340 Hb_015306_020--Hb_028872_140 Hb_001789_090 Hb_001789_090 Hb_015306_020--Hb_001789_090 Hb_015306_020--Hb_009111_050 Hb_004046_010 Hb_004046_010 Hb_015306_020--Hb_004046_010 Hb_000398_180 Hb_000398_180 Hb_028872_140--Hb_000398_180 Hb_033642_010 Hb_033642_010 Hb_028872_140--Hb_033642_010 Hb_028872_140--Hb_009111_050 Hb_028872_140--Hb_002811_360 Hb_005062_070--Hb_001030_120 Hb_005062_070--Hb_004046_010 Hb_000030_010 Hb_000030_010 Hb_005062_070--Hb_000030_010 Hb_000190_140 Hb_000190_140 Hb_005062_070--Hb_000190_140 Hb_005062_070--Hb_009111_050 Hb_009111_050--Hb_033642_010 Hb_009111_050--Hb_001030_120 Hb_009111_050--Hb_000190_140 Hb_004724_200 Hb_004724_200 Hb_002811_360--Hb_004724_200 Hb_039837_010 Hb_039837_010 Hb_002811_360--Hb_039837_010 Hb_000062_240 Hb_000062_240 Hb_002811_360--Hb_000062_240 Hb_001301_200 Hb_001301_200 Hb_002811_360--Hb_001301_200 Hb_004195_160 Hb_004195_160 Hb_001030_120--Hb_004195_160 Hb_002686_270 Hb_002686_270 Hb_001030_120--Hb_002686_270 Hb_000032_570 Hb_000032_570 Hb_001030_120--Hb_000032_570 Hb_001030_120--Hb_028872_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5531 7.4713 5.10147 8.57254 20.9433 27.5426
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.303 20.4703 25.9663 11.5251 7.88918

CAGE analysis