Hb_001454_220

Information

Type -
Description -
Location Contig1454: 139928-147518
Sequence    

Annotation

kegg
ID rcu:RCOM_0681230
description sentrin/sumo-specific protease, putative (EC:3.6.1.5)
nr
ID XP_012083947.1
description PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
swissprot
ID Q94F30
description Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1
trembl
ID A0A067JYE9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18883 PE=4 SV=1
Gene Ontology
ID GO:0008233
description ubiquitin-like-specific protease esd4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11764: 139314-139646 , PASA_asmbl_11765: 139696-140024 , PASA_asmbl_11766: 140664-141890 , PASA_asmbl_11767: 143525-143769
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_220 0.0 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
2 Hb_000024_120 0.0890709142 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
3 Hb_002073_280 0.0892014164 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
4 Hb_002902_020 0.0908346897 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
5 Hb_000345_490 0.091105062 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
6 Hb_000230_430 0.0912432124 - - catalytic, putative [Ricinus communis]
7 Hb_007576_220 0.0984513356 - - PREDICTED: kanadaptin [Jatropha curcas]
8 Hb_000264_070 0.1008973674 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
9 Hb_007017_070 0.1009957351 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
10 Hb_000218_020 0.1011160665 - - synaptosomal associated protein, putative [Ricinus communis]
11 Hb_000422_110 0.1013447073 - - PREDICTED: uncharacterized protein At1g08160-like [Jatropha curcas]
12 Hb_003018_040 0.1019397571 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
13 Hb_000227_310 0.1023115187 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
14 Hb_002282_060 0.1024733726 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
15 Hb_003470_030 0.1034985724 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
16 Hb_007193_110 0.1041363113 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
17 Hb_000625_120 0.1042633685 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
18 Hb_013749_020 0.1048493489 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
19 Hb_000116_510 0.1051288308 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
20 Hb_004032_230 0.1052355041 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_220 Hb_001454_220 Hb_000024_120 Hb_000024_120 Hb_001454_220--Hb_000024_120 Hb_002073_280 Hb_002073_280 Hb_001454_220--Hb_002073_280 Hb_002902_020 Hb_002902_020 Hb_001454_220--Hb_002902_020 Hb_000345_490 Hb_000345_490 Hb_001454_220--Hb_000345_490 Hb_000230_430 Hb_000230_430 Hb_001454_220--Hb_000230_430 Hb_007576_220 Hb_007576_220 Hb_001454_220--Hb_007576_220 Hb_000024_120--Hb_000345_490 Hb_005610_080 Hb_005610_080 Hb_000024_120--Hb_005610_080 Hb_009449_090 Hb_009449_090 Hb_000024_120--Hb_009449_090 Hb_005054_190 Hb_005054_190 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_002282_060 Hb_002282_060 Hb_002073_280--Hb_002282_060 Hb_013749_020 Hb_013749_020 Hb_002073_280--Hb_013749_020 Hb_002073_280--Hb_007576_220 Hb_155159_010 Hb_155159_010 Hb_002073_280--Hb_155159_010 Hb_000526_060 Hb_000526_060 Hb_002073_280--Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_002073_280--Hb_000896_060 Hb_002902_020--Hb_000230_430 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_002902_020--Hb_000345_490 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070 Hb_000345_490--Hb_005610_080 Hb_000625_120 Hb_000625_120 Hb_000345_490--Hb_000625_120 Hb_000345_490--Hb_005054_190 Hb_001243_060 Hb_001243_060 Hb_000230_430--Hb_001243_060 Hb_004631_190 Hb_004631_190 Hb_000230_430--Hb_004631_190 Hb_000230_430--Hb_000264_070 Hb_009780_100 Hb_009780_100 Hb_000230_430--Hb_009780_100 Hb_118840_050 Hb_118840_050 Hb_000230_430--Hb_118840_050 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3069 24.0993 15.4036 9.49844 17.0784 9.45999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58147 4.14219 4.47951 4.77993 8.405

CAGE analysis