Hb_001454_230

Information

Type -
Description -
Location Contig1454: 148890-156749
Sequence    

Annotation

kegg
ID rcu:RCOM_0681240
description kif4, putative
nr
ID XP_012083948.1
description PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
swissprot
ID Q940B8
description Kinesin-13A OS=Arabidopsis thaliana GN=KINESIN-13A PE=1 SV=1
trembl
ID A0A067K7L7
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_18884 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-13a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11769: 149078-156702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_230 0.0 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
2 Hb_001252_090 0.0779260907 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
3 Hb_012262_030 0.0795013874 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
4 Hb_000703_190 0.0819267227 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
5 Hb_000046_500 0.0825923802 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
6 Hb_011214_160 0.0857884096 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
7 Hb_000023_300 0.0895190958 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
8 Hb_001863_360 0.0896220806 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
9 Hb_000227_160 0.0902644321 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
10 Hb_001051_070 0.0905577656 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
11 Hb_000069_640 0.0907315243 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
12 Hb_000705_230 0.0912256819 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
13 Hb_000748_030 0.091745098 - - ATP binding protein, putative [Ricinus communis]
14 Hb_000477_100 0.0924397881 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
15 Hb_007409_040 0.0929380688 - - actin family protein [Populus trichocarpa]
16 Hb_008748_030 0.0942198034 - - conserved hypothetical protein [Ricinus communis]
17 Hb_019181_040 0.0946211269 - - component of oligomeric golgi complex, putative [Ricinus communis]
18 Hb_020178_040 0.096203229 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000317_040 0.0968363768 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_000197_020 0.0973263401 - - PREDICTED: protein RER1A [Jatropha curcas]

Gene co-expression network

sample Hb_001454_230 Hb_001454_230 Hb_001252_090 Hb_001252_090 Hb_001454_230--Hb_001252_090 Hb_012262_030 Hb_012262_030 Hb_001454_230--Hb_012262_030 Hb_000703_190 Hb_000703_190 Hb_001454_230--Hb_000703_190 Hb_000046_500 Hb_000046_500 Hb_001454_230--Hb_000046_500 Hb_011214_160 Hb_011214_160 Hb_001454_230--Hb_011214_160 Hb_000023_300 Hb_000023_300 Hb_001454_230--Hb_000023_300 Hb_002351_030 Hb_002351_030 Hb_001252_090--Hb_002351_030 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_000854_040 Hb_000854_040 Hb_001252_090--Hb_000854_040 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_000317_040 Hb_000317_040 Hb_001252_090--Hb_000317_040 Hb_000227_160 Hb_000227_160 Hb_012262_030--Hb_000227_160 Hb_012262_030--Hb_000023_300 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_189216_010 Hb_189216_010 Hb_012262_030--Hb_189216_010 Hb_008748_030 Hb_008748_030 Hb_012262_030--Hb_008748_030 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_000703_190--Hb_000317_040 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_019181_040 Hb_019181_040 Hb_000046_500--Hb_019181_040 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_003998_040 Hb_003998_040 Hb_011214_160--Hb_003998_040 Hb_001703_050 Hb_001703_050 Hb_011214_160--Hb_001703_050 Hb_000371_090 Hb_000371_090 Hb_011214_160--Hb_000371_090 Hb_001051_070 Hb_001051_070 Hb_011214_160--Hb_001051_070 Hb_000197_020 Hb_000197_020 Hb_011214_160--Hb_000197_020 Hb_000139_530 Hb_000139_530 Hb_011214_160--Hb_000139_530 Hb_000023_300--Hb_000227_160 Hb_001097_040 Hb_001097_040 Hb_000023_300--Hb_001097_040 Hb_000023_300--Hb_001051_070 Hb_010672_020 Hb_010672_020 Hb_000023_300--Hb_010672_020 Hb_000023_300--Hb_008748_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.507 28.4213 33.0914 53.6954 17.6137 17.8897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2256 17.9279 28.3302 23.7692 21.4615

CAGE analysis