Hb_001454_260

Information

Type -
Description -
Location Contig1454: 187516-198646
Sequence    

Annotation

kegg
ID rcu:RCOM_0681280
description hypothetical protein
nr
ID XP_002516932.1
description hypothetical protein RCOM_0681280 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RT63
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0681280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11773: 187615-188389
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_260 0.0 - - hypothetical protein RCOM_0681280 [Ricinus communis]
2 Hb_000795_060 0.0935255554 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
3 Hb_003581_100 0.0974625378 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
4 Hb_033153_090 0.1046322391 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
5 Hb_001421_060 0.1178039032 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
6 Hb_011781_030 0.1262048232 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
7 Hb_005400_030 0.1267266826 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
8 Hb_004871_040 0.1271998693 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
9 Hb_002016_120 0.1274512686 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
10 Hb_148025_010 0.1288134408 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
11 Hb_000927_020 0.1299463067 - - synaptosomal associated protein, putative [Ricinus communis]
12 Hb_001476_080 0.1299975662 - - PREDICTED: eukaryotic translation initiation factor 5A-like [Jatropha curcas]
13 Hb_004055_070 0.1312946301 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
14 Hb_000003_080 0.1313555408 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
15 Hb_008695_040 0.1320806886 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
16 Hb_011360_070 0.1346977625 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
17 Hb_006541_010 0.1359640375 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
18 Hb_003125_190 0.1363830714 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
19 Hb_071130_030 0.1379884237 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
20 Hb_008554_070 0.1387129908 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_260 Hb_001454_260 Hb_000795_060 Hb_000795_060 Hb_001454_260--Hb_000795_060 Hb_003581_100 Hb_003581_100 Hb_001454_260--Hb_003581_100 Hb_033153_090 Hb_033153_090 Hb_001454_260--Hb_033153_090 Hb_001421_060 Hb_001421_060 Hb_001454_260--Hb_001421_060 Hb_011781_030 Hb_011781_030 Hb_001454_260--Hb_011781_030 Hb_005400_030 Hb_005400_030 Hb_001454_260--Hb_005400_030 Hb_000003_080 Hb_000003_080 Hb_000795_060--Hb_000003_080 Hb_001842_100 Hb_001842_100 Hb_000795_060--Hb_001842_100 Hb_010423_040 Hb_010423_040 Hb_000795_060--Hb_010423_040 Hb_000272_020 Hb_000272_020 Hb_000795_060--Hb_000272_020 Hb_000795_060--Hb_001421_060 Hb_000680_140 Hb_000680_140 Hb_003581_100--Hb_000680_140 Hb_003581_100--Hb_001421_060 Hb_005736_060 Hb_005736_060 Hb_003581_100--Hb_005736_060 Hb_024714_010 Hb_024714_010 Hb_003581_100--Hb_024714_010 Hb_009711_020 Hb_009711_020 Hb_003581_100--Hb_009711_020 Hb_003581_100--Hb_011781_030 Hb_033153_090--Hb_001421_060 Hb_000926_300 Hb_000926_300 Hb_033153_090--Hb_000926_300 Hb_012573_070 Hb_012573_070 Hb_033153_090--Hb_012573_070 Hb_006816_530 Hb_006816_530 Hb_033153_090--Hb_006816_530 Hb_001476_080 Hb_001476_080 Hb_033153_090--Hb_001476_080 Hb_000815_040 Hb_000815_040 Hb_033153_090--Hb_000815_040 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_000483_410 Hb_000483_410 Hb_011781_030--Hb_000483_410 Hb_018133_060 Hb_018133_060 Hb_011781_030--Hb_018133_060 Hb_143629_230 Hb_143629_230 Hb_011781_030--Hb_143629_230 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_000317_340 Hb_000317_340 Hb_011781_030--Hb_000317_340 Hb_004032_100 Hb_004032_100 Hb_005400_030--Hb_004032_100 Hb_007735_030 Hb_007735_030 Hb_005400_030--Hb_007735_030 Hb_000152_550 Hb_000152_550 Hb_005400_030--Hb_000152_550 Hb_000086_550 Hb_000086_550 Hb_005400_030--Hb_000086_550 Hb_000024_080 Hb_000024_080 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.11615 1.02324 1.16354 1.62503 0.735078 3.58205
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.24979 4.48548 1.51122 1.29206 2.37809

CAGE analysis