Hb_001454_270

Information

Type -
Description -
Location Contig1454: 208787-214443
Sequence    

Annotation

kegg
ID rcu:RCOM_0681290
description condensin, putative
nr
ID XP_012083953.1
description PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
swissprot
ID P42695
description Condensin-2 complex subunit D3 OS=Homo sapiens GN=NCAPD3 PE=1 SV=2
trembl
ID B9RT64
description Condensin, putative OS=Ricinus communis GN=RCOM_0681290 PE=4 SV=1
Gene Ontology
ID GO:0007076
description condensin-2 complex subunit d3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11775: 209332-209623 , PASA_asmbl_11778: 210207-210610 , PASA_asmbl_11779: 210844-212328 , PASA_asmbl_11780: 212846-213326 , PASA_asmbl_11781: 213460-213954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_270 0.0 - - PREDICTED: condensin-2 complex subunit D3 isoform X2 [Jatropha curcas]
2 Hb_003902_070 0.0776280996 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000030_080 0.0779222395 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
4 Hb_002700_030 0.090789929 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
5 Hb_003106_090 0.0923550913 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
6 Hb_001263_030 0.0938545275 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
7 Hb_004592_030 0.0966109233 - - unknown [Lotus japonicus]
8 Hb_000480_060 0.0991737009 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
9 Hb_181744_010 0.0997526118 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
10 Hb_005276_090 0.1008355988 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
11 Hb_005116_120 0.1016010934 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
12 Hb_000077_300 0.1017547144 - - PREDICTED: expansin-B3-like [Jatropha curcas]
13 Hb_000085_360 0.1020852496 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
14 Hb_033041_010 0.1040477573 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
15 Hb_005183_150 0.1048246699 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
16 Hb_000576_140 0.1058589719 - - PREDICTED: uncharacterized protein LOC105638282 [Jatropha curcas]
17 Hb_005542_150 0.1065152236 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
18 Hb_005332_030 0.113546034 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004631_040 0.1140830268 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
20 Hb_000260_670 0.1141885986 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001454_270 Hb_001454_270 Hb_003902_070 Hb_003902_070 Hb_001454_270--Hb_003902_070 Hb_000030_080 Hb_000030_080 Hb_001454_270--Hb_000030_080 Hb_002700_030 Hb_002700_030 Hb_001454_270--Hb_002700_030 Hb_003106_090 Hb_003106_090 Hb_001454_270--Hb_003106_090 Hb_001263_030 Hb_001263_030 Hb_001454_270--Hb_001263_030 Hb_004592_030 Hb_004592_030 Hb_001454_270--Hb_004592_030 Hb_003902_070--Hb_000030_080 Hb_003902_070--Hb_004592_030 Hb_000261_550 Hb_000261_550 Hb_003902_070--Hb_000261_550 Hb_000077_300 Hb_000077_300 Hb_003902_070--Hb_000077_300 Hb_002757_010 Hb_002757_010 Hb_003902_070--Hb_002757_010 Hb_000030_080--Hb_004592_030 Hb_000030_080--Hb_001263_030 Hb_001076_010 Hb_001076_010 Hb_000030_080--Hb_001076_010 Hb_004197_020 Hb_004197_020 Hb_000030_080--Hb_004197_020 Hb_002700_030--Hb_000077_300 Hb_080147_070 Hb_080147_070 Hb_002700_030--Hb_080147_070 Hb_001284_070 Hb_001284_070 Hb_002700_030--Hb_001284_070 Hb_002700_030--Hb_002757_010 Hb_001310_060 Hb_001310_060 Hb_002700_030--Hb_001310_060 Hb_002700_030--Hb_003902_070 Hb_005276_090 Hb_005276_090 Hb_003106_090--Hb_005276_090 Hb_000085_360 Hb_000085_360 Hb_003106_090--Hb_000085_360 Hb_000038_070 Hb_000038_070 Hb_003106_090--Hb_000038_070 Hb_005542_150 Hb_005542_150 Hb_003106_090--Hb_005542_150 Hb_000317_120 Hb_000317_120 Hb_003106_090--Hb_000317_120 Hb_000856_390 Hb_000856_390 Hb_003106_090--Hb_000856_390 Hb_004531_060 Hb_004531_060 Hb_001263_030--Hb_004531_060 Hb_020025_030 Hb_020025_030 Hb_001263_030--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_001263_030--Hb_000140_200 Hb_005332_030 Hb_005332_030 Hb_001263_030--Hb_005332_030 Hb_004592_030--Hb_004197_020 Hb_004631_040 Hb_004631_040 Hb_004592_030--Hb_004631_040 Hb_000480_060 Hb_000480_060 Hb_004592_030--Hb_000480_060 Hb_004592_030--Hb_000085_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0515305 2.24052 1.27177 0.00919161 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0162541 0.43236 0.253906

CAGE analysis