Hb_001454_280

Information

Type -
Description -
Location Contig1454: 214952-218137
Sequence    

Annotation

kegg
ID rcu:RCOM_0681300
description Chaperone protein dnaJ, putative
nr
ID XP_012083954.1
description PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
swissprot
ID Q9FH28
description Chaperone protein dnaJ 49 OS=Arabidopsis thaliana GN=ATJ49 PE=2 SV=2
trembl
ID A0A067JVA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18887 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11781: 213460-213954 , PASA_asmbl_11784: 215084-215234 , PASA_asmbl_11786: 216949-217263 , PASA_asmbl_11787: 215953-217927
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_280 0.0 - - PREDICTED: chaperone protein dnaJ 49 [Jatropha curcas]
2 Hb_001140_350 0.0427917901 - - PREDICTED: uncharacterized protein LOC105648465 [Jatropha curcas]
3 Hb_002174_020 0.0478564547 - - ring finger protein, putative [Ricinus communis]
4 Hb_007635_030 0.0504465452 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
5 Hb_006252_020 0.058025269 - - PREDICTED: SET and MYND domain-containing protein 4 isoform X2 [Jatropha curcas]
6 Hb_008112_030 0.0642447373 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003680_150 0.0656105549 - - srpk, putative [Ricinus communis]
8 Hb_002107_070 0.0661036299 - - hypothetical protein RCOM_1598630 [Ricinus communis]
9 Hb_000162_280 0.0672926273 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
10 Hb_010053_030 0.0683318909 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
11 Hb_000510_310 0.0684704768 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
12 Hb_002823_030 0.0691683087 - - -
13 Hb_002329_040 0.0693950987 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_009112_010 0.0707202725 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
15 Hb_000922_370 0.070850512 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
16 Hb_005321_020 0.0735482711 - - splicing factor-related family protein [Populus trichocarpa]
17 Hb_010193_050 0.0740822058 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003605_130 0.0742817696 - - PREDICTED: probable arabinosyltransferase ARAD1 [Populus euphratica]
19 Hb_000680_090 0.0743462282 - - Protein SEY1, putative [Ricinus communis]
20 Hb_000648_100 0.0748211388 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]

Gene co-expression network

sample Hb_001454_280 Hb_001454_280 Hb_001140_350 Hb_001140_350 Hb_001454_280--Hb_001140_350 Hb_002174_020 Hb_002174_020 Hb_001454_280--Hb_002174_020 Hb_007635_030 Hb_007635_030 Hb_001454_280--Hb_007635_030 Hb_006252_020 Hb_006252_020 Hb_001454_280--Hb_006252_020 Hb_008112_030 Hb_008112_030 Hb_001454_280--Hb_008112_030 Hb_003680_150 Hb_003680_150 Hb_001454_280--Hb_003680_150 Hb_000645_120 Hb_000645_120 Hb_001140_350--Hb_000645_120 Hb_080313_010 Hb_080313_010 Hb_001140_350--Hb_080313_010 Hb_000648_100 Hb_000648_100 Hb_001140_350--Hb_000648_100 Hb_000510_310 Hb_000510_310 Hb_001140_350--Hb_000510_310 Hb_003605_130 Hb_003605_130 Hb_001140_350--Hb_003605_130 Hb_002174_020--Hb_008112_030 Hb_002174_020--Hb_006252_020 Hb_000160_290 Hb_000160_290 Hb_002174_020--Hb_000160_290 Hb_005731_090 Hb_005731_090 Hb_002174_020--Hb_005731_090 Hb_002174_020--Hb_007635_030 Hb_007635_030--Hb_008112_030 Hb_002329_040 Hb_002329_040 Hb_007635_030--Hb_002329_040 Hb_002107_070 Hb_002107_070 Hb_007635_030--Hb_002107_070 Hb_009615_170 Hb_009615_170 Hb_007635_030--Hb_009615_170 Hb_004659_080 Hb_004659_080 Hb_006252_020--Hb_004659_080 Hb_003044_020 Hb_003044_020 Hb_006252_020--Hb_003044_020 Hb_004128_050 Hb_004128_050 Hb_006252_020--Hb_004128_050 Hb_006252_020--Hb_008112_030 Hb_000960_050 Hb_000960_050 Hb_008112_030--Hb_000960_050 Hb_004453_110 Hb_004453_110 Hb_008112_030--Hb_004453_110 Hb_008112_030--Hb_005731_090 Hb_002823_030 Hb_002823_030 Hb_003680_150--Hb_002823_030 Hb_007576_110 Hb_007576_110 Hb_003680_150--Hb_007576_110 Hb_014361_070 Hb_014361_070 Hb_003680_150--Hb_014361_070 Hb_000853_230 Hb_000853_230 Hb_003680_150--Hb_000853_230 Hb_023480_010 Hb_023480_010 Hb_003680_150--Hb_023480_010 Hb_000484_030 Hb_000484_030 Hb_003680_150--Hb_000484_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.9416 12.7538 6.31976 9.32975 14.4212 14.064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.43683 6.65745 7.12545 10.7661 5.89893

CAGE analysis