Hb_001454_290

Information

Type -
Description -
Location Contig1454: 221218-221580
Sequence    

Annotation

kegg
ID rcu:RCOM_0681420
description hypothetical protein
nr
ID XP_012083955.1
description PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYF5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18888 PE=4 SV=1
Gene Ontology
ID GO:0016021
description PREDICTED: uncharacterized protein LOC105643442

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 007_C22.ab1: 220985-221642

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_290 0.0 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
2 Hb_002871_050 0.1092899548 transcription factor TF Family: ARF auxin response factor 1 family protein [Populus trichocarpa]
3 Hb_005679_110 0.1247161098 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
4 Hb_001345_020 0.1248724628 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
5 Hb_005730_070 0.126302362 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
6 Hb_002110_060 0.128264052 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
7 Hb_000723_050 0.1289876889 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
8 Hb_000567_060 0.1334619602 - - PREDICTED: U-box domain-containing protein 7 [Jatropha curcas]
9 Hb_008554_090 0.1345606538 - - zinc finger protein, putative [Ricinus communis]
10 Hb_001832_240 0.1357900669 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
11 Hb_001349_020 0.1366084647 - - PREDICTED: leucoanthocyanidin reductase-like [Jatropha curcas]
12 Hb_010164_020 0.1393828068 - - PREDICTED: abscisate beta-glucosyltransferase-like [Jatropha curcas]
13 Hb_009767_030 0.1394616678 - - PREDICTED: uncharacterized protein LOC105631977 [Jatropha curcas]
14 Hb_004551_050 0.1405302216 - - PREDICTED: glucose-6-phosphate/phosphate translocator 2, chloroplastic [Jatropha curcas]
15 Hb_009070_030 0.1432606395 - - PREDICTED: mechanosensitive ion channel protein 10 [Jatropha curcas]
16 Hb_006262_030 0.1441723179 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
17 Hb_003881_020 0.1475391902 - - PREDICTED: stellacyanin-like [Jatropha curcas]
18 Hb_004525_110 0.1483977147 - - hypothetical protein POPTR_0007s12850g [Populus trichocarpa]
19 Hb_033312_050 0.1491399244 - - PREDICTED: uncharacterized protein LOC105638598, partial [Jatropha curcas]
20 Hb_004703_010 0.1540475053 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]

Gene co-expression network

sample Hb_001454_290 Hb_001454_290 Hb_002871_050 Hb_002871_050 Hb_001454_290--Hb_002871_050 Hb_005679_110 Hb_005679_110 Hb_001454_290--Hb_005679_110 Hb_001345_020 Hb_001345_020 Hb_001454_290--Hb_001345_020 Hb_005730_070 Hb_005730_070 Hb_001454_290--Hb_005730_070 Hb_002110_060 Hb_002110_060 Hb_001454_290--Hb_002110_060 Hb_000723_050 Hb_000723_050 Hb_001454_290--Hb_000723_050 Hb_000482_070 Hb_000482_070 Hb_002871_050--Hb_000482_070 Hb_002871_050--Hb_005679_110 Hb_000567_060 Hb_000567_060 Hb_002871_050--Hb_000567_060 Hb_000018_090 Hb_000018_090 Hb_002871_050--Hb_000018_090 Hb_001832_240 Hb_001832_240 Hb_002871_050--Hb_001832_240 Hb_003881_020 Hb_003881_020 Hb_002871_050--Hb_003881_020 Hb_001349_020 Hb_001349_020 Hb_005679_110--Hb_001349_020 Hb_000696_030 Hb_000696_030 Hb_005679_110--Hb_000696_030 Hb_001776_070 Hb_001776_070 Hb_005679_110--Hb_001776_070 Hb_005679_110--Hb_000482_070 Hb_005679_110--Hb_001345_020 Hb_001345_020--Hb_001349_020 Hb_014250_010 Hb_014250_010 Hb_001345_020--Hb_014250_010 Hb_002503_050 Hb_002503_050 Hb_001345_020--Hb_002503_050 Hb_001638_150 Hb_001638_150 Hb_001345_020--Hb_001638_150 Hb_001345_020--Hb_000567_060 Hb_005730_070--Hb_001349_020 Hb_008554_090 Hb_008554_090 Hb_005730_070--Hb_008554_090 Hb_000057_180 Hb_000057_180 Hb_005730_070--Hb_000057_180 Hb_000017_320 Hb_000017_320 Hb_005730_070--Hb_000017_320 Hb_002304_190 Hb_002304_190 Hb_005730_070--Hb_002304_190 Hb_002003_010 Hb_002003_010 Hb_005730_070--Hb_002003_010 Hb_002110_060--Hb_008554_090 Hb_009070_030 Hb_009070_030 Hb_002110_060--Hb_009070_030 Hb_162286_030 Hb_162286_030 Hb_002110_060--Hb_162286_030 Hb_000009_130 Hb_000009_130 Hb_002110_060--Hb_000009_130 Hb_002110_060--Hb_005730_070 Hb_000340_350 Hb_000340_350 Hb_000723_050--Hb_000340_350 Hb_000723_050--Hb_005730_070 Hb_033312_050 Hb_033312_050 Hb_000723_050--Hb_033312_050 Hb_004551_050 Hb_004551_050 Hb_000723_050--Hb_004551_050 Hb_000723_050--Hb_008554_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.508041 17.7897 36.2191 20.2491 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.483934 1.33082 0 34.1769 4.83438

CAGE analysis