Hb_001454_340

Information

Type -
Description -
Location Contig1454: 259937-260566
Sequence    

Annotation

kegg
ID rcu:RCOM_0681480
description Late embryogenesis abundant protein Lea5, putative
nr
ID AGC51784.1
description ATDI21 [Manihot esculenta]
swissprot
ID P46522
description Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1
trembl
ID V9M4X1
description ATDI21 OS=Manihot esculenta GN=ATDI21 PE=2 SV=1
Gene Ontology
ID GO:0006950
description late embryogenesis abundant protein lea5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11798: 259711-260784
cDNA
(Sanger)
(ID:Location)		 003_E23.ab1: 259711-260724

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_340 0.0 - - ATDI21 [Manihot esculenta]
2 Hb_033006_040 0.1076603768 - - sulfate transporter, putative [Ricinus communis]
3 Hb_006711_010 0.1305550744 - - cytoplasmic dynein light chain, putative [Ricinus communis]
4 Hb_000380_040 0.1364413828 - - bel1 homeotic protein, putative [Ricinus communis]
5 Hb_050484_010 0.1444184615 - - unnamed protein product [Vitis vinifera]
6 Hb_003119_070 0.1491429248 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_002007_230 0.1505044023 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
8 Hb_085327_010 0.150984926 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
9 Hb_001269_020 0.1599469336 - - PREDICTED: beta-Amyrin Synthase 2-like [Vitis vinifera]
10 Hb_000300_570 0.1604655711 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
11 Hb_005653_020 0.1623448611 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
12 Hb_011618_040 0.1634251287 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003677_010 0.1674485933 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 1 [Jatropha curcas]
14 Hb_001157_150 0.1682049235 - - PREDICTED: transmembrane protein 45A-like [Jatropha curcas]
15 Hb_000185_060 0.1691080434 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
16 Hb_000236_360 0.1697497345 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
17 Hb_129279_020 0.1698107936 - - PREDICTED: putative disease resistance protein At3g14460 [Jatropha curcas]
18 Hb_004109_300 0.1701635852 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
19 Hb_000141_220 0.1708946498 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
20 Hb_005663_050 0.1762572154 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001454_340 Hb_001454_340 Hb_033006_040 Hb_033006_040 Hb_001454_340--Hb_033006_040 Hb_006711_010 Hb_006711_010 Hb_001454_340--Hb_006711_010 Hb_000380_040 Hb_000380_040 Hb_001454_340--Hb_000380_040 Hb_050484_010 Hb_050484_010 Hb_001454_340--Hb_050484_010 Hb_003119_070 Hb_003119_070 Hb_001454_340--Hb_003119_070 Hb_002007_230 Hb_002007_230 Hb_001454_340--Hb_002007_230 Hb_033006_040--Hb_000380_040 Hb_009083_080 Hb_009083_080 Hb_033006_040--Hb_009083_080 Hb_001157_150 Hb_001157_150 Hb_033006_040--Hb_001157_150 Hb_000185_060 Hb_000185_060 Hb_033006_040--Hb_000185_060 Hb_000300_570 Hb_000300_570 Hb_033006_040--Hb_000300_570 Hb_006711_010--Hb_000380_040 Hb_003677_010 Hb_003677_010 Hb_006711_010--Hb_003677_010 Hb_001269_020 Hb_001269_020 Hb_006711_010--Hb_001269_020 Hb_058116_010 Hb_058116_010 Hb_006711_010--Hb_058116_010 Hb_004109_300 Hb_004109_300 Hb_006711_010--Hb_004109_300 Hb_000236_360 Hb_000236_360 Hb_000380_040--Hb_000236_360 Hb_000380_040--Hb_001157_150 Hb_000380_040--Hb_009083_080 Hb_181092_010 Hb_181092_010 Hb_000380_040--Hb_181092_010 Hb_000380_040--Hb_000185_060 Hb_129279_020 Hb_129279_020 Hb_050484_010--Hb_129279_020 Hb_050484_010--Hb_000236_360 Hb_002315_070 Hb_002315_070 Hb_050484_010--Hb_002315_070 Hb_050484_010--Hb_004109_300 Hb_050484_010--Hb_001157_150 Hb_005663_050 Hb_005663_050 Hb_003119_070--Hb_005663_050 Hb_002003_020 Hb_002003_020 Hb_003119_070--Hb_002003_020 Hb_001838_050 Hb_001838_050 Hb_003119_070--Hb_001838_050 Hb_003031_030 Hb_003031_030 Hb_003119_070--Hb_003031_030 Hb_017866_020 Hb_017866_020 Hb_003119_070--Hb_017866_020 Hb_000616_050 Hb_000616_050 Hb_003119_070--Hb_000616_050 Hb_003086_200 Hb_003086_200 Hb_002007_230--Hb_003086_200 Hb_005797_030 Hb_005797_030 Hb_002007_230--Hb_005797_030 Hb_002007_230--Hb_000300_570 Hb_001864_010 Hb_001864_010 Hb_002007_230--Hb_001864_010 Hb_000265_010 Hb_000265_010 Hb_002007_230--Hb_000265_010 Hb_151364_010 Hb_151364_010 Hb_002007_230--Hb_151364_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.906 3440.3 33.3418 503.533 44.8078 346.963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.67007 12.4234 3.4953 5216.26 46.9109

CAGE analysis