Hb_001454_390

Information

Type -
Description -
Location Contig1454: 295331-298383
Sequence    

Annotation

kegg
ID tps:THAPSDRAFT_35985
description 8-kd dynein light chain, DLC8, pin
nr
ID XP_002292046.1
description 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
swissprot
ID Q21557
description Probable dynein light chain 2, cytoplasmic OS=Caenorhabditis elegans GN=dlc-2 PE=3 SV=2
trembl
ID B8C706
description 8-kd dynein light chain, DLC8, pin OS=Thalassiosira pseudonana GN=THAPSDRAFT_35985 PE=4 SV=1
Gene Ontology
ID GO:0005875
description dynein light chain cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11809: 295431-298418 , PASA_asmbl_11810: 295431-298341
cDNA
(Sanger)
(ID:Location)		 005_O06.ab1: 295452-298418

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_390 0.0 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
2 Hb_001780_060 0.0976969908 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
3 Hb_000590_090 0.0979368819 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_170116_010 0.1103915527 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
5 Hb_002875_090 0.1141681227 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_003253_010 0.1171667496 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
7 Hb_000038_130 0.120220536 - - -
8 Hb_000352_150 0.1213241507 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
9 Hb_003304_080 0.1257917542 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
10 Hb_004738_090 0.1295205198 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002388_060 0.1299687086 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000270_400 0.1312225743 - - lipase, putative [Ricinus communis]
13 Hb_003636_090 0.1316957667 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
14 Hb_001386_130 0.1386834571 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
15 Hb_009662_030 0.1438224137 - - hypothetical protein JCGZ_15748 [Jatropha curcas]
16 Hb_010098_080 0.1447272506 - - PREDICTED: non-specific phospholipase C4-like [Jatropha curcas]
17 Hb_002078_430 0.1452429228 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
18 Hb_000523_020 0.1457602788 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
19 Hb_005389_140 0.1463209619 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
20 Hb_095397_010 0.1467541747 - - hypothetical protein 25 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001454_390 Hb_001454_390 Hb_001780_060 Hb_001780_060 Hb_001454_390--Hb_001780_060 Hb_000590_090 Hb_000590_090 Hb_001454_390--Hb_000590_090 Hb_170116_010 Hb_170116_010 Hb_001454_390--Hb_170116_010 Hb_002875_090 Hb_002875_090 Hb_001454_390--Hb_002875_090 Hb_003253_010 Hb_003253_010 Hb_001454_390--Hb_003253_010 Hb_000038_130 Hb_000038_130 Hb_001454_390--Hb_000038_130 Hb_004738_090 Hb_004738_090 Hb_001780_060--Hb_004738_090 Hb_004545_150 Hb_004545_150 Hb_001780_060--Hb_004545_150 Hb_000500_310 Hb_000500_310 Hb_001780_060--Hb_000500_310 Hb_001780_060--Hb_002875_090 Hb_003906_120 Hb_003906_120 Hb_001780_060--Hb_003906_120 Hb_005389_140 Hb_005389_140 Hb_000590_090--Hb_005389_140 Hb_001386_130 Hb_001386_130 Hb_000590_090--Hb_001386_130 Hb_000680_150 Hb_000680_150 Hb_000590_090--Hb_000680_150 Hb_000714_020 Hb_000714_020 Hb_000590_090--Hb_000714_020 Hb_005714_040 Hb_005714_040 Hb_000590_090--Hb_005714_040 Hb_043637_010 Hb_043637_010 Hb_170116_010--Hb_043637_010 Hb_000352_150 Hb_000352_150 Hb_170116_010--Hb_000352_150 Hb_000523_020 Hb_000523_020 Hb_170116_010--Hb_000523_020 Hb_170116_010--Hb_002875_090 Hb_001635_220 Hb_001635_220 Hb_170116_010--Hb_001635_220 Hb_003636_090 Hb_003636_090 Hb_002875_090--Hb_003636_090 Hb_002875_090--Hb_000352_150 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_010098_080 Hb_010098_080 Hb_003253_010--Hb_010098_080 Hb_003777_070 Hb_003777_070 Hb_003253_010--Hb_003777_070 Hb_007810_050 Hb_007810_050 Hb_003253_010--Hb_007810_050 Hb_002477_230 Hb_002477_230 Hb_003253_010--Hb_002477_230 Hb_003253_010--Hb_000500_310 Hb_000038_130--Hb_000714_020 Hb_000038_130--Hb_001635_220 Hb_000117_040 Hb_000117_040 Hb_000038_130--Hb_000117_040 Hb_002078_430 Hb_002078_430 Hb_000038_130--Hb_002078_430 Hb_000038_130--Hb_000590_090 Hb_004374_010 Hb_004374_010 Hb_000038_130--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
525.342 19.1892 26.127 9.72806 336.633 175.524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
223.667 142.015 101.727 21.524 3.62184

CAGE analysis