Hb_001454_410

Information

Type -
Description -
Location Contig1454: 306880-307733
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22470g
description senescence-associated family protein
nr
ID XP_012083970.1
description PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K6D4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11815: 307181-307767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_410 0.0 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
2 Hb_001221_480 0.1163382765 - - metal ion binding protein, putative [Ricinus communis]
3 Hb_000181_160 0.1168572372 - - PREDICTED: uncharacterized protein LOC105637575 isoform X2 [Jatropha curcas]
4 Hb_003453_030 0.1175705998 - - hypothetical protein JCGZ_26893 [Jatropha curcas]
5 Hb_008695_130 0.1328176132 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003807_020 0.1408347208 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
7 Hb_001408_050 0.1410133873 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002750_010 0.1444568125 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
9 Hb_055305_010 0.1451240876 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_004657_040 0.1463750317 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]
11 Hb_000407_080 0.1465659107 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
12 Hb_010174_170 0.148825897 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X1 [Jatropha curcas]
13 Hb_000335_050 0.1509551856 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
14 Hb_002236_070 0.1515298893 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH36-like [Jatropha curcas]
15 Hb_000227_370 0.1538186496 - - sugar transporter, putative [Ricinus communis]
16 Hb_008705_040 0.1559559079 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
17 Hb_002551_090 0.15618786 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
18 Hb_004195_170 0.1591353843 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000616_050 0.1605746812 - - PREDICTED: uncharacterized protein LOC105639906 [Jatropha curcas]
20 Hb_001678_030 0.1610113499 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]

Gene co-expression network

sample Hb_001454_410 Hb_001454_410 Hb_001221_480 Hb_001221_480 Hb_001454_410--Hb_001221_480 Hb_000181_160 Hb_000181_160 Hb_001454_410--Hb_000181_160 Hb_003453_030 Hb_003453_030 Hb_001454_410--Hb_003453_030 Hb_008695_130 Hb_008695_130 Hb_001454_410--Hb_008695_130 Hb_003807_020 Hb_003807_020 Hb_001454_410--Hb_003807_020 Hb_001408_050 Hb_001408_050 Hb_001454_410--Hb_001408_050 Hb_001221_480--Hb_003807_020 Hb_000649_030 Hb_000649_030 Hb_001221_480--Hb_000649_030 Hb_004447_020 Hb_004447_020 Hb_001221_480--Hb_004447_020 Hb_111582_010 Hb_111582_010 Hb_001221_480--Hb_111582_010 Hb_000335_050 Hb_000335_050 Hb_001221_480--Hb_000335_050 Hb_004657_040 Hb_004657_040 Hb_000181_160--Hb_004657_040 Hb_000181_160--Hb_001408_050 Hb_009823_010 Hb_009823_010 Hb_000181_160--Hb_009823_010 Hb_000181_160--Hb_001221_480 Hb_000098_310 Hb_000098_310 Hb_000181_160--Hb_000098_310 Hb_004195_170 Hb_004195_170 Hb_003453_030--Hb_004195_170 Hb_003453_030--Hb_001408_050 Hb_012807_060 Hb_012807_060 Hb_003453_030--Hb_012807_060 Hb_022501_020 Hb_022501_020 Hb_003453_030--Hb_022501_020 Hb_009581_050 Hb_009581_050 Hb_003453_030--Hb_009581_050 Hb_008695_130--Hb_001221_480 Hb_002750_010 Hb_002750_010 Hb_008695_130--Hb_002750_010 Hb_003987_030 Hb_003987_030 Hb_008695_130--Hb_003987_030 Hb_008695_130--Hb_003807_020 Hb_008695_130--Hb_000335_050 Hb_003807_020--Hb_000335_050 Hb_000579_180 Hb_000579_180 Hb_003807_020--Hb_000579_180 Hb_003807_020--Hb_004447_020 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_003807_020--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_001408_050--Hb_009823_010 Hb_001678_030 Hb_001678_030 Hb_001408_050--Hb_001678_030 Hb_003576_050 Hb_003576_050 Hb_001408_050--Hb_003576_050 Hb_000638_090 Hb_000638_090 Hb_001408_050--Hb_000638_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0451243 4.18471 1.3768 2.72445 0.215001 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.104876 0.164838 0.143598 7.34595 0.317678

CAGE analysis