Hb_001454_420

Information

Type -
Description -
Location Contig1454: 315278-316847
Sequence    

Annotation

kegg
ID rcu:RCOM_0681960
description multidrug resistance pump, putative
nr
ID XP_002516950.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID B9RT81
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0681960 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001454_420 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_181908_010 0.0168895678 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
3 Hb_008008_040 0.0261729347 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
4 Hb_001373_170 0.0288612059 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 9 [Jatropha curcas]
5 Hb_005653_050 0.045168504 - - PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase [Jatropha curcas]
6 Hb_004225_010 0.0521877524 - - -
7 Hb_003858_010 0.0595353652 - - xyloglucan endotransglucosylase/hydrolase [Gossypium hirsutum]
8 Hb_000445_410 0.0687172688 - - hypothetical protein EUGRSUZ_F02776 [Eucalyptus grandis]
9 Hb_003793_010 0.0735714916 - - hypothetical protein JCGZ_27055 [Jatropha curcas]
10 Hb_093084_030 0.0739093179 - - oleosin2 [Plukenetia volubilis]
11 Hb_001308_010 0.083224278 - - conserved hypothetical protein [Ricinus communis]
12 Hb_092010_010 0.0853758514 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
13 Hb_185608_010 0.0862537268 - - hypothetical protein POPTR_0004s22210g [Populus trichocarpa]
14 Hb_004218_270 0.091962418 - - hypothetical protein CICLE_v100134152mg, partial [Citrus clementina]
15 Hb_057862_010 0.0927896109 - - protein binding protein, putative [Ricinus communis]
16 Hb_142204_010 0.0942779925 - - pyruvate decarboxylase [Saccharum officinarum]
17 Hb_103225_040 0.0957402585 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
18 Hb_152868_020 0.0966556039 - - RecName: Full=2-methylbutanal oxime monooxygenase; AltName: Full=Cytochrome P450 71E7 [Manihot esculenta]
19 Hb_012114_090 0.0980145586 - - tubulin beta chain, putative [Ricinus communis]
20 Hb_005614_060 0.0981231468 - - Uncharacterized protein TCM_019750 [Theobroma cacao]

Gene co-expression network

sample Hb_001454_420 Hb_001454_420 Hb_181908_010 Hb_181908_010 Hb_001454_420--Hb_181908_010 Hb_008008_040 Hb_008008_040 Hb_001454_420--Hb_008008_040 Hb_001373_170 Hb_001373_170 Hb_001454_420--Hb_001373_170 Hb_005653_050 Hb_005653_050 Hb_001454_420--Hb_005653_050 Hb_004225_010 Hb_004225_010 Hb_001454_420--Hb_004225_010 Hb_003858_010 Hb_003858_010 Hb_001454_420--Hb_003858_010 Hb_181908_010--Hb_008008_040 Hb_181908_010--Hb_001373_170 Hb_181908_010--Hb_003858_010 Hb_000445_410 Hb_000445_410 Hb_181908_010--Hb_000445_410 Hb_181908_010--Hb_005653_050 Hb_008008_040--Hb_001373_170 Hb_008008_040--Hb_000445_410 Hb_003793_010 Hb_003793_010 Hb_008008_040--Hb_003793_010 Hb_008008_040--Hb_003858_010 Hb_001373_170--Hb_005653_050 Hb_001373_170--Hb_004225_010 Hb_001373_170--Hb_000445_410 Hb_005653_050--Hb_004225_010 Hb_001308_010 Hb_001308_010 Hb_005653_050--Hb_001308_010 Hb_005653_050--Hb_008008_040 Hb_004225_010--Hb_001308_010 Hb_029584_030 Hb_029584_030 Hb_004225_010--Hb_029584_030 Hb_004225_010--Hb_181908_010 Hb_000227_360 Hb_000227_360 Hb_003858_010--Hb_000227_360 Hb_142204_010 Hb_142204_010 Hb_003858_010--Hb_142204_010 Hb_011344_040 Hb_011344_040 Hb_003858_010--Hb_011344_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0746896 0.461757 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.156277

CAGE analysis