Hb_001456_010

Information

Type -
Description -
Location Contig1456: 14871-19503
Sequence    

Annotation

kegg
ID rcu:RCOM_1452630
description o-methyltransferase, putative (EC:2.1.1.146)
nr
ID XP_002513062.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q6WUC2
description (R,S)-reticuline 7-O-methyltransferase OS=Papaver somniferum GN=PSOMT1 PE=1 SV=1
trembl
ID B9RGB0
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_1452630 PE=4 SV=1
Gene Ontology
ID GO:0008171
description o-methyltransferase omt2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11820: 14715-16248
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001456_010 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_001504_250 0.0013963353 - - ABC transporter family protein [Hevea brasiliensis]
3 Hb_121058_010 0.0016641281 - - ATP binding protein, putative [Ricinus communis]
4 Hb_185246_010 0.0017196099 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
5 Hb_104011_010 0.0036192964 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
6 Hb_009225_030 0.0042413568 - - ring finger protein, putative [Ricinus communis]
7 Hb_045150_010 0.0067902022 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
8 Hb_003529_020 0.0096532395 - - hypothetical protein JCGZ_04979 [Jatropha curcas]
9 Hb_000140_010 0.0102941678 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_002490_070 0.010836218 - - PREDICTED: uncharacterized protein LOC105123384 isoform X1 [Populus euphratica]
11 Hb_003531_110 0.0116333605 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_000272_060 0.0117289954 - - unnamed protein product [Vitis vinifera]
13 Hb_000012_360 0.01265123 - - PREDICTED: uncharacterized protein LOC104248159 [Nicotiana sylvestris]
14 Hb_002759_210 0.0144829101 - - Peroxidase 6 precursor family protein [Populus trichocarpa]
15 Hb_001377_140 0.0206669085 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
16 Hb_001279_060 0.0209577995 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
17 Hb_003891_020 0.0214772843 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
18 Hb_002254_020 0.0231378353 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
19 Hb_003792_010 0.0248858981 - - conserved hypothetical protein [Ricinus communis]
20 Hb_043777_010 0.0266480126 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001456_010 Hb_001456_010 Hb_001504_250 Hb_001504_250 Hb_001456_010--Hb_001504_250 Hb_121058_010 Hb_121058_010 Hb_001456_010--Hb_121058_010 Hb_185246_010 Hb_185246_010 Hb_001456_010--Hb_185246_010 Hb_104011_010 Hb_104011_010 Hb_001456_010--Hb_104011_010 Hb_009225_030 Hb_009225_030 Hb_001456_010--Hb_009225_030 Hb_045150_010 Hb_045150_010 Hb_001456_010--Hb_045150_010 Hb_001504_250--Hb_121058_010 Hb_001504_250--Hb_185246_010 Hb_001504_250--Hb_104011_010 Hb_001504_250--Hb_045150_010 Hb_001504_250--Hb_009225_030 Hb_121058_010--Hb_185246_010 Hb_121058_010--Hb_104011_010 Hb_121058_010--Hb_009225_030 Hb_121058_010--Hb_045150_010 Hb_185246_010--Hb_104011_010 Hb_185246_010--Hb_009225_030 Hb_185246_010--Hb_045150_010 Hb_104011_010--Hb_009225_030 Hb_000140_010 Hb_000140_010 Hb_104011_010--Hb_000140_010 Hb_009225_030--Hb_000140_010 Hb_003529_020 Hb_003529_020 Hb_045150_010--Hb_003529_020 Hb_002490_070 Hb_002490_070 Hb_045150_010--Hb_002490_070 Hb_000272_060 Hb_000272_060 Hb_045150_010--Hb_000272_060 Hb_000012_360 Hb_000012_360 Hb_045150_010--Hb_000012_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.281575 0.297876 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis