Hb_001456_050

Information

Type transcription factor
Description TF Family: G2-like
Location Contig1456: 72267-78322
Sequence    

Annotation

kegg
ID rcu:RCOM_0868230
description transcription factor, putative
nr
ID XP_002519958.1
description transcription factor, putative [Ricinus communis]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID B9S1U3
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0868230 PE=4 SV=1
Gene Ontology
ID GO:0003677
description myb family transcription factor apl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11823: 72482-72955 , PASA_asmbl_11824: 72403-76865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001456_050 0.0 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
2 Hb_001287_060 0.1406804467 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
3 Hb_000832_280 0.1419798081 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
4 Hb_000002_360 0.1593644182 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
5 Hb_000216_050 0.1619243936 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
6 Hb_002028_160 0.1681208656 - - PREDICTED: E3 ubiquitin-protein ligase ATL4-like [Populus euphratica]
7 Hb_001922_060 0.1759627151 - - ATP binding protein, putative [Ricinus communis]
8 Hb_026549_050 0.178019641 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
9 Hb_004324_030 0.1787164996 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
10 Hb_000866_320 0.1904107457 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_000181_210 0.1917622816 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
12 Hb_030944_010 0.1995412983 - - PREDICTED: uncharacterized protein LOC105633455 [Jatropha curcas]
13 Hb_000567_180 0.2002049753 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.5 [Jatropha curcas]
14 Hb_172426_050 0.2023411657 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
15 Hb_000069_520 0.2033003567 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
16 Hb_000953_080 0.2054800649 - - PREDICTED: PAN domain-containing protein At5g03700 [Jatropha curcas]
17 Hb_000056_350 0.2068797675 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
18 Hb_000009_300 0.2102554962 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
19 Hb_002999_080 0.2125522836 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
20 Hb_008948_060 0.2145007696 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001456_050 Hb_001456_050 Hb_001287_060 Hb_001287_060 Hb_001456_050--Hb_001287_060 Hb_000832_280 Hb_000832_280 Hb_001456_050--Hb_000832_280 Hb_000002_360 Hb_000002_360 Hb_001456_050--Hb_000002_360 Hb_000216_050 Hb_000216_050 Hb_001456_050--Hb_000216_050 Hb_002028_160 Hb_002028_160 Hb_001456_050--Hb_002028_160 Hb_001922_060 Hb_001922_060 Hb_001456_050--Hb_001922_060 Hb_001287_060--Hb_000832_280 Hb_001287_060--Hb_000216_050 Hb_004324_030 Hb_004324_030 Hb_001287_060--Hb_004324_030 Hb_000181_210 Hb_000181_210 Hb_001287_060--Hb_000181_210 Hb_001287_060--Hb_001922_060 Hb_000832_280--Hb_000181_210 Hb_000056_350 Hb_000056_350 Hb_000832_280--Hb_000056_350 Hb_000832_280--Hb_004324_030 Hb_000832_280--Hb_000002_360 Hb_026549_050 Hb_026549_050 Hb_000832_280--Hb_026549_050 Hb_000002_360--Hb_026549_050 Hb_000866_320 Hb_000866_320 Hb_000002_360--Hb_000866_320 Hb_001433_160 Hb_001433_160 Hb_000002_360--Hb_001433_160 Hb_003387_050 Hb_003387_050 Hb_000002_360--Hb_003387_050 Hb_000002_360--Hb_001922_060 Hb_000216_050--Hb_004324_030 Hb_000216_050--Hb_000002_360 Hb_000216_050--Hb_026549_050 Hb_002739_040 Hb_002739_040 Hb_000216_050--Hb_002739_040 Hb_143766_080 Hb_143766_080 Hb_000216_050--Hb_143766_080 Hb_003376_300 Hb_003376_300 Hb_002028_160--Hb_003376_300 Hb_000069_520 Hb_000069_520 Hb_002028_160--Hb_000069_520 Hb_011129_020 Hb_011129_020 Hb_002028_160--Hb_011129_020 Hb_000317_230 Hb_000317_230 Hb_002028_160--Hb_000317_230 Hb_000454_200 Hb_000454_200 Hb_002028_160--Hb_000454_200 Hb_002028_160--Hb_000832_280 Hb_001922_060--Hb_026549_050 Hb_001922_060--Hb_000181_210 Hb_001922_060--Hb_000832_280 Hb_001922_060--Hb_004324_030 Hb_000567_180 Hb_000567_180 Hb_001922_060--Hb_000567_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.505491 0.393234 0.970971 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.135648 0.159988 0 0.712422 0.107012

CAGE analysis